Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2n07
         (330 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067211-12|AAK66018.2|  276|Caenorhabditis elegans Hypothetical...    28   1.4  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AL117207-6|CAB60396.2|  372|Caenorhabditis elegans Hypothetical ...    27   2.4  
AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical...    27   3.2  
Z82283-4|CAB05286.1|  689|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AC006644-5|AAF39834.1|  786|Caenorhabditis elegans Hypothetical ...    27   4.2  
AC199170-3|ABO33262.1|  317|Caenorhabditis elegans Hypothetical ...    26   5.5  
Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical pr...    26   7.3  
AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquino...    26   7.3  
AL033514-37|CAA22087.2|  441|Caenorhabditis elegans Hypothetical...    25   9.7  

>AF067211-12|AAK66018.2|  276|Caenorhabditis elegans Hypothetical
           protein B0205.11 protein.
          Length = 276

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -1

Query: 318 MSNLFFINDTNGNNNHLANK*VFYCFRNSFVIKKPINMPNYSYTPTIGRTYVYDNKYY 145
           M N + I D N   + L    VF      F+  KPI+ PN+     + R YV  N+ Y
Sbjct: 151 MENQWTI-DRNLVKSSLRQMGVFVAENTIFLAAKPISGPNFDIEAKLFRFYVVVNQQY 207


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
           protein K04H4.2c protein.
          Length = 1446

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +3

Query: 60  EDPIASPLVHVRLGASCAWRF**DSPSFCN 149
           E PI S  V  R G SC +     SP FCN
Sbjct: 647 ECPIGSVEVDPRFGTSCRYSLQCPSPYFCN 676


>AL117207-6|CAB60396.2|  372|Caenorhabditis elegans Hypothetical
           protein Y60A3A.8 protein.
          Length = 372

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 216 PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVE 91
           PI+ P ++  P + ++ V +   YKN  CL K +K  + LV+
Sbjct: 2   PISEPTWAELPFLFKSAVVELLPYKNRCCLRKCSKSDQFLVD 43


>AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.5 protein.
          Length = 917

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 159 DNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFL 25
           DN Y   L CLI+ ++ K H+  H  + K   +LD  ++A +  L
Sbjct: 568 DNTYITGLNCLIEISRNKSHIF-HPLDAKL--VLDILLIASERIL 609


>Z82283-4|CAB05286.1|  689|Caenorhabditis elegans Hypothetical
           protein T23G4.4 protein.
          Length = 689

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 132 CLIKNAKRKKHLVEHEQEEKQWDLLDNYMV 43
           CL+K    + H    +   K W+L+  YM+
Sbjct: 238 CLLKEGNSETHTENLDNLTKTWNLISKYMI 267


>AC006644-5|AAF39834.1|  786|Caenorhabditis elegans Hypothetical
           protein F55A3.2 protein.
          Length = 786

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 147 YKNLGCLIKNAKRKKHLVEHEQEEKQ 70
           Y+ +  ++ + KRK H+V HE+  K+
Sbjct: 658 YRKISSVVISKKRKNHIVPHEKIRKK 683


>AC199170-3|ABO33262.1|  317|Caenorhabditis elegans Hypothetical
           protein T08D2.2 protein.
          Length = 317

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 216 PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVE 91
           PI+ P ++  P   ++ V +   YKN  CL K +K  + LV+
Sbjct: 2   PISEPTWAEFPFFFKSAVVELLPYKNRCCLRKCSKPNQFLVD 43


>Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical
           protein F44G4.2 protein.
          Length = 160

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -1

Query: 219 KPINMPNYSY-TPTIGRTYV 163
           KPI  P+Y Y TPT GRTY+
Sbjct: 75  KPI--PDYFYRTPTTGRTYI 92


>AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquinone
           oxidoreductaseAGGG subunit protein.
          Length = 160

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -1

Query: 219 KPINMPNYSY-TPTIGRTYV 163
           KPI  P+Y Y TPT GRTY+
Sbjct: 75  KPI--PDYFYRTPTTGRTYI 92


>AL033514-37|CAA22087.2|  441|Caenorhabditis elegans Hypothetical
           protein Y75B8A.27 protein.
          Length = 441

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 303 FINDTNGNNNHLANK*VFYCFRNSFVIKKPIN 208
           F+ D N NN +++ + V  CFR     KK I+
Sbjct: 266 FLGDNNSNNFNISQEDVKQCFRRFVDGKKMIS 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,145,407
Number of Sequences: 27780
Number of extensions: 165584
Number of successful extensions: 544
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)