Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2n06
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    29   0.92 
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    28   1.6  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   3.7  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   8.6  

>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 149 DHSLSIQLHSFLSA-THTPKSGENTMPKSW 235
           DHS +I LH+ LSA +H     ENT P  W
Sbjct: 114 DHSNAILLHTGLSASSHAHSHPENTAPGWW 143


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 131 SSAPTYDHSLSIQLHSFLSATHTPKSGENT 220
           S  PT D S ++  HSF S TH P    N+
Sbjct: 225 SRLPTDDSSHTVGSHSFTSGTHPPIVSSNS 254


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 445 VFMMWFYFCPTAENDYNGWWHGLRIVGFC 531
           V ++  YF   +EN YN WW      GFC
Sbjct: 538 VSIITVYFQLCSEN-YNWWWRSFITPGFC 565


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 187 CYPYPQEWGEHYAQIVVMVRFLLYYSLPLAVIALFYV 297
           CY  PQ + +HY  I    R++L +++   ++A+  +
Sbjct: 834 CYRKPQSYEDHYQDI--RTRYVLVWAVSNLILAIVLI 868


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,419
Number of Sequences: 5004
Number of extensions: 67848
Number of successful extensions: 187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)