Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2n06
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0549 - 34664552-34664901,34665013-34665109                       30   1.7  
11_06_0129 - 20397179-20397537,20397749-20400497                       29   2.9  
09_06_0222 - 21655236-21655841                                         29   2.9  
08_02_0544 + 18445810-18445995,18446894-18447053,18448186-184483...    29   2.9  
01_05_0436 + 22134275-22134387,22134481-22135249,22137024-221370...    29   5.1  
04_03_0819 + 20018496-20019487,20019587-20019721,20019834-200199...    28   6.8  
01_01_0181 - 1548392-1548466,1548689-1549379,1549475-1549604,154...    28   6.8  
02_04_0513 - 23569212-23569675,23569759-23569801,23569888-235700...    28   9.0  

>03_06_0549 - 34664552-34664901,34665013-34665109
          Length = 148

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 210 GRTLCPNRGHGAFSSLLLVATSCDCVILCTHGLAFSAQY 326
           G T C     GA  +LL + T C C+  CT+     AQY
Sbjct: 54  GSTSCG--ASGALYALLAMVTGCQCIYSCTYRGKMRAQY 90


>11_06_0129 - 20397179-20397537,20397749-20400497
          Length = 1035

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 235 VMVRFLLYYSLPLAVIALFYVLMAWHLVLSTQ 330
           V++  ++     LAV++L Y+L AWH  + T+
Sbjct: 671 VVIPIVISLVATLAVLSLLYILFAWHKKIQTE 702


>09_06_0222 - 21655236-21655841
          Length = 201

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/76 (25%), Positives = 31/76 (40%)
 Frame = +3

Query: 216 TLCPNRGHGAFSSLLLVATSCDCVILCTHGLAFSAQYSEHAW*NARNSATDAGAQESRSN 395
           T   + G G  +   L+  +  C +LC  GLA  A+ S     N  + A +A      + 
Sbjct: 17  TAAASGGRGVHTDTFLILAAVLCFLLCVVGLALVARCSRLC--NPSSFAVEAEEAMPPAP 74

Query: 396 CAGFRSGLCCLFPTLT 443
           C G +       PT++
Sbjct: 75  CKGLKRKALLSLPTVS 90


>08_02_0544 +
           18445810-18445995,18446894-18447053,18448186-18448386,
           18448474-18448538,18448697-18448761,18448784-18448874,
           18448965-18449051,18449204-18449254,18449604-18449825,
           18449987-18450080,18450159-18450299,18450391-18450476
          Length = 482

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/78 (25%), Positives = 35/78 (44%)
 Frame = +1

Query: 109 GLLATPAFIGSYLRPFVVNPTTQFLVCYPYPQEWGEHYAQIVVMVRFLLYYSLPLAVIAL 288
           G +  P F+   + P V + T  F + +       E+Y    ++ RF + Y+L   V+A 
Sbjct: 361 GFIMGPLFLELGIPPQVSSATATFAMMFSSSMSVVEYY----LLDRFPVPYALFFTVVAF 416

Query: 289 FYVLMAWHLVLSTQNMPG 342
           F  ++  H+V    N  G
Sbjct: 417 FAAIIGQHIVRKLINWLG 434


>01_05_0436 +
           22134275-22134387,22134481-22135249,22137024-22137086,
           22137375-22137755,22137900-22138001
          Length = 475

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 609 SVKVLPEDSAGAVQSYWIDAAVEERKTEADDPEPVPPSV 493
           S + L  DSAG++ S+ +DAA     +    P P PP V
Sbjct: 102 SGRSLSIDSAGSMSSFSLDAAAALAMSTLAVPHPYPPPV 140


>04_03_0819 +
           20018496-20019487,20019587-20019721,20019834-20019978,
           20020135-20020416,20020649-20020910,20021028-20021224,
           20021315-20021425,20022341-20022392,20022442-20022584,
           20023121-20023210,20023300-20023800,20024108-20024176,
           20024866-20025011,20025475-20025530,20026140-20026286,
           20027405-20027530,20027608-20027876,20028026-20028127
          Length = 1274

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 141 LLTTIRCQSNYTVSCLLPIPPRVGRTLCPNRGHGAFSSLLLVATSCDCVILCTH 302
           LL  +R    Y++S      PR+     P R HG     LL++TS  C +  TH
Sbjct: 37  LLLLLRSDRLYSLSLSRRRGPRLRLLASPRRRHGRRRRALLLSTS-GCALRLTH 89


>01_01_0181 -
           1548392-1548466,1548689-1549379,1549475-1549604,
           1549704-1549884
          Length = 358

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 576 AVQSYWIDAAVEERKTEADDPEPVPP 499
           AV+ YW+   +E+    A DP P PP
Sbjct: 147 AVRCYWMPRLLEKMAGAATDPTPPPP 172


>02_04_0513 -
           23569212-23569675,23569759-23569801,23569888-23570000,
           23570099-23570158,23570472-23570541,23570887-23570951,
           23571548-23571685,23571764-23573015
          Length = 734

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 473 GQK*NHIMKTCEGRKQAAKTRTKASTV 393
           GQ+ NH+++  +GR    K R +ASTV
Sbjct: 129 GQRGNHVVRGAKGRFLPTKPRPEASTV 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,943,386
Number of Sequences: 37544
Number of extensions: 506795
Number of successful extensions: 1419
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)