Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2n06
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82071-2|CAB04918.2|  362|Caenorhabditis elegans Hypothetical pr...    39   0.004
U41995-5|AAA83462.1|  354|Caenorhabditis elegans G protein, alph...    30   1.5  
M38250-1|AAA28061.1|  354|Caenorhabditis elegans G protein alpha...    30   1.5  
AY008126-1|AAG32079.1|  354|Caenorhabditis elegans heterotrimeri...    30   1.5  
Z81123-5|CAB76411.2|  393|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z50071-9|CAA90404.3|  393|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine rece...    28   6.0  
AF068714-9|AAC17810.1|   87|Caenorhabditis elegans Hypothetical ...    28   6.0  
AF039710-1|AAB96691.1|  316|Caenorhabditis elegans Serpentine re...    28   6.0  
Z66567-3|CAA91489.1|  444|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z82071-2|CAB04918.2|  362|Caenorhabditis elegans Hypothetical
           protein W05B5.2 protein.
          Length = 362

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 40/186 (21%), Positives = 80/186 (43%), Gaps = 3/186 (1%)
 Frame = +1

Query: 91  GIWILAGLLATPAFIGSYLR--PFV-VNPTTQFLVCYPYPQEWGEHYAQIVVMVRFLLYY 261
           GIW +A  L++P  +  +L   PFV  N TT++       + W E + +   +++ +  +
Sbjct: 165 GIWFIAMFLSSPEPVTLHLAGAPFVRPNFTTKWGT--RCKESWSEEFQKNYQLLQTIFSF 222

Query: 262 SLPLAVIALFYVLMAWHLVLSTQNMPGEMQGTQRQMRARRKXXXXXXXXXXXXXXXXXPS 441
            LPL VI+    ++  H+V +       +    RQ+  R+K                 P 
Sbjct: 223 VLPLLVIS----ILCLHMVRTLHFSANYLTVANRQISIRKKAVRMLCAVVFLFSMSNLPV 278

Query: 442 HVFMMWFYFCPTAENDYNGWWHGLRIVGFCLSFLNSCVNPIALYCTSGIFRKHFNRYLLC 621
           H++ +   +   + +         +++    S+ +SC+NPI     SG F +  + Y+L 
Sbjct: 279 HLYNIALNYDLLSTDVSTNTIAVRKLLPRVFSYSSSCLNPILYSFLSGRF-EFCSIYILE 337

Query: 622 RGSSTR 639
           +  S +
Sbjct: 338 KNQSIK 343


>U41995-5|AAA83462.1|  354|Caenorhabditis elegans G protein, alpha
           subunit protein 3 protein.
          Length = 354

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -2

Query: 603 KVLPEDSAGAVQSYWIDAAVEE---RKTEADDPEPVP 502
           KV PE+ A A+Q+ W D AV++   +  E   PE  P
Sbjct: 118 KVFPEELANAIQALWNDKAVQQVIAKGNEFQMPESAP 154


>M38250-1|AAA28061.1|  354|Caenorhabditis elegans G protein alpha
           subunit protein.
          Length = 354

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -2

Query: 603 KVLPEDSAGAVQSYWIDAAVEE---RKTEADDPEPVP 502
           KV PE+ A A+Q+ W D AV++   +  E   PE  P
Sbjct: 118 KVFPEELANAIQALWNDKAVQQVIAKGNEFQMPESAP 154


>AY008126-1|AAG32079.1|  354|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 354

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -2

Query: 603 KVLPEDSAGAVQSYWIDAAVEE---RKTEADDPEPVP 502
           KV PE+ A A+Q+ W D AV++   +  E   PE  P
Sbjct: 118 KVFPEELANAIQALWNDKAVQQVIAKGNEFQMPESAP 154


>Z81123-5|CAB76411.2|  393|Caenorhabditis elegans Hypothetical
           protein T07D4.1 protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +1

Query: 436 PSHVFMMWFYFCPTAENDYNGWWHGLRIVGFCLSFLNSCVNPIALYCTSGIFRKHFNRYL 615
           P H  +++  F  T     + W    + + +   F++S +NPI   C S  FR   +  +
Sbjct: 315 PHHARLLYTSF-QTGTICNSNWTMIFQPLSYIFLFISSAINPILYACLSKRFRNALSDVI 373

Query: 616 LCR 624
            CR
Sbjct: 374 HCR 376


>Z50071-9|CAA90404.3|  393|Caenorhabditis elegans Hypothetical
           protein T07D4.1 protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +1

Query: 436 PSHVFMMWFYFCPTAENDYNGWWHGLRIVGFCLSFLNSCVNPIALYCTSGIFRKHFNRYL 615
           P H  +++  F  T     + W    + + +   F++S +NPI   C S  FR   +  +
Sbjct: 315 PHHARLLYTSF-QTGTICNSNWTMIFQPLSYIFLFISSAINPILYACLSKRFRNALSDVI 373

Query: 616 LCR 624
            CR
Sbjct: 374 HCR 376


>U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine
           receptor, class v protein31 protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 547 SCVNPIALYCTSGIFRKHFNRYLLCRGSSTRGAR 648
           S +NP  +   +  F K F   L C+ S T+G R
Sbjct: 267 SYINPFCIIILNRDFSKQFRTMLKCQNSKTKGRR 300


>AF068714-9|AAC17810.1|   87|Caenorhabditis elegans Hypothetical
           protein B0348.1 protein.
          Length = 87

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 120 CQQTCQYPYPDCCSYC*ACGSLAAPEQLGC 31
           C   C     D   YC +CG+L A  Q GC
Sbjct: 57  CYWLCCQSSKDTLHYCPSCGTLLATRQGGC 86


>AF039710-1|AAB96691.1|  316|Caenorhabditis elegans Serpentine
           receptor, class x protein110 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
 Frame = +1

Query: 61  ATRLTIATAIGIWILAGLLATPAFIGSYLR-PFVVNPTTQFLVCYPYPQEWGEHYAQIVV 237
           +TR+T+A     W+     +T   +    R PF  +         P+P      Y  +  
Sbjct: 125 STRITVAAMAISWLFTVWFSTLIGMPDICRFPFSFDHV-------PFPDYSENDYQCVEA 177

Query: 238 MVRFLLYYSLPLAVIALFY-VLMA---WHLVLSTQNMPGEMQGTQRQMRAR 378
           ++ FL+YY L LAV   F  +L+A   + L  S++++  E   ++R+   R
Sbjct: 178 LISFLIYYLLVLAVSTNFMNILIAIKLFCLSKSSKSLSSESAKSRRRSNIR 228


>Z66567-3|CAA91489.1|  444|Caenorhabditis elegans Hypothetical
           protein ZK455.3 protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 511 LRIVGFCLSFLNSCVNPIALYCTSGIFRKHFNRYL 615
           ++I    L++ NSC+NPI     S  FR+ F R +
Sbjct: 324 VQIASQVLAYTNSCLNPILYALMSQSFREGFIRVM 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,875,310
Number of Sequences: 27780
Number of extensions: 407072
Number of successful extensions: 1346
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)