Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2m18
(531 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 104 9e-24
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 35 0.009
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 33 0.027
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 33 0.035
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 29 0.57
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 1.00
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 27 1.3
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 27 2.3
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 3.0
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 4.0
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 26 4.0
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 26 4.0
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 4.0
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 25 5.3
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 25 7.0
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 25 7.0
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac... 25 9.3
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 9.3
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 104 bits (249), Expect = 9e-24
Identities = 46/80 (57%), Positives = 65/80 (81%)
Frame = +1
Query: 127 KVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 306
+VQKVM+ PIN IF+ LQ + V IWL+E ++R++G I GFDE+MNIVLD+A +V K+
Sbjct: 4 RVQKVMIPPINFIFKLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDAKN 63
Query: 307 KNRKQIGRIMMKGDNITLIQ 366
N++++GRI++KGDNITLIQ
Sbjct: 64 -NKRELGRILLKGDNITLIQ 82
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 34.7 bits (76), Expect = 0.009
Identities = 15/57 (26%), Positives = 38/57 (66%)
Frame = +1
Query: 196 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 366
Q+++ N + ++ G + G+D ++NIVL+++ E + + K IG + ++G+++ +I+
Sbjct: 16 QVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVK-IGSVAIRGNSVIMIE 71
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 33.1 bits (72), Expect = 0.027
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +1
Query: 199 IWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 363
+W+ G +VGFD+Y+NIVL + E + ++ +++ G+ + ++
Sbjct: 19 LWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCML 73
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 32.7 bits (71), Expect = 0.035
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 226 RIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKG 345
+I G + GFD+ MN+VLD+ EE ++ K G I G
Sbjct: 45 QITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLG 84
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 28.7 bits (61), Expect = 0.57
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 235 GHIVGFDEYMNIVLDEAEEV-HMKSKN 312
G ++ FD +MN+VL + +E H+K +N
Sbjct: 26 GQLLAFDGFMNLVLSDCQEYRHIKKQN 52
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.9 bits (59), Expect = 1.00
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 273 SRRS*RSPYEIEKQKTNRKNNDEGRQHNTHTEREPQRVSVKLGYKFAKSEV 425
S++ S ++KQ+T + N + + T + EP+ L +FAK+ V
Sbjct: 378 SKQDSPSTVPVDKQETAKPINKQVSSNETSAQEEPRESVAALRARFAKANV 428
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 229 IEGHIVGFDEYMNIVLDEAEEV 294
+ G + +DE++N+VL +AEE+
Sbjct: 32 LNGRLHAYDEHLNMVLGDAEEI 53
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 506 LEIEKTSIPVTVISLIHM*LELLFTRNDFTFSKFIT*LHTDALG 375
LE+ S+ T ++ + +LLF +N+ F KF+ H +G
Sbjct: 533 LELTSESLSSTNDTIRRLQRDLLFLQNELRFEKFVRQQHLQNIG 576
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 3.0
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Frame = +3
Query: 72 IFHSRKSIQTKNGL*RPTESSEGDGTAHQPYLPIPTEPESCANLAI*K--RESED*RTHR 245
+ H S+++ N + + TA L E E + I K +++ TH+
Sbjct: 111 VLHDCSSLKSVNEALKQAQDQNLKQTAQLQNLLSDKEKEVEKKITIIKDLKDALASSTHQ 170
Query: 246 GF**IHEYCSRRS*RSPYEIEKQKTNRKNNDEGRQHNTHTEREPQRVSVKL 398
H + S ++ YE E QK +KN+ +NT RE Q V+ KL
Sbjct: 171 VLELQHTQQEKASLQTNYEFELQKLTQKNSIL-ENNNTWLSRELQGVNDKL 220
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.8 bits (54), Expect = 4.0
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 100 QKMAYKGPPKVQKVMVQPI 156
+K+AYKGPP+++K + I
Sbjct: 945 KKIAYKGPPQLRKTLQSQI 963
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 354 NTHTEREPQRVSVKLGYKFAKSEVIPS 434
+ HT R +S+KL +++ S+VIP+
Sbjct: 308 DNHTSRVAILISMKLAFQYQLSQVIPT 334
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 354 YVVSLHHYSSYLFSVFRFHMDFFSFVENNIHVF 256
Y+VS+ S Y+ R H ++ENNI VF
Sbjct: 96 YLVSMEDVSIYVIDSHRPHNLNNIYIENNIFVF 128
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 306 EKQKTNRKNNDEGRQHNTHTEREPQR 383
+ + +NND R + HT REPQ+
Sbjct: 1430 QSRSFTNENNDNLRSVSRHTRREPQQ 1455
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 276 RRS*RSPYEIEKQKTNRKNNDEGRQHNTHTEREPQRVSVKLGYKFAKSEVI 428
RRS ++ ++EK+K K D+ ++ +T +++ Q ++ G K E +
Sbjct: 261 RRSAQNSAKLEKEKAKEKQKDKDQEQDTVSDKN-QIDEIEKGQKEVDEEPV 310
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 44 LAAFICFYHNFSFTKVNTNKKWLIKAHRKFR 136
L AF+CF + T T +KW + FR
Sbjct: 723 LLAFLCFAMHILLTPEATLRKWASSIYLSFR 753
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 256 HQNPRCVLQSSDSRFHIAKFAHDS 185
H N R L S DSRFH H +
Sbjct: 308 HHNVRTTLFSDDSRFHSKIHTHST 331
>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
Smf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 78
Score = 24.6 bits (51), Expect = 9.3
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 232 EGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNI 354
+G + D YMN+ L AEE+ + +G I+++ +N+
Sbjct: 31 KGTLQSVDSYMNLQLLNAEEL-VDGVKTGDLGEILIRCNNV 70
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 24.6 bits (51), Expect = 9.3
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +1
Query: 103 KMAYKGPPKVQKVM 144
K+ YKGPP+V+K +
Sbjct: 494 KIVYKGPPQVRKAL 507
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,442
Number of Sequences: 5004
Number of extensions: 44605
Number of successful extensions: 129
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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