Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2m18
(531 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 153 4e-37
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 153 4e-37
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 153 4e-37
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 153 4e-37
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 149 6e-36
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 143 4e-34
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 129 5e-30
S60260-1|AAC60592.1| 104|Homo sapiens B-raf protein. 82 1e-15
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 38 0.017
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 38 0.017
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 38 0.017
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 38 0.017
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 38 0.017
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 38 0.017
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 38 0.017
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 38 0.017
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 38 0.017
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 38 0.017
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 36 0.089
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 36 0.089
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 36 0.089
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 36 0.089
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 34 0.36
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 153 bits (371), Expect = 4e-37
Identities = 69/88 (78%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = +1
Query: 106 MAYKGP-PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 282
MAY+G KVQKVMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+
Sbjct: 1 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60
Query: 283 AEEVHMKSKNRKQIGRIMMKGDNITLIQ 366
AEE+H K+K+RKQ+GRIM+KGDNITL+Q
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQ 88
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 153 bits (371), Expect = 4e-37
Identities = 69/88 (78%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = +1
Query: 106 MAYKGP-PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 282
MAY+G KVQKVMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+
Sbjct: 1 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60
Query: 283 AEEVHMKSKNRKQIGRIMMKGDNITLIQ 366
AEE+H K+K+RKQ+GRIM+KGDNITL+Q
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQ 88
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 153 bits (371), Expect = 4e-37
Identities = 69/88 (78%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = +1
Query: 106 MAYKGP-PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 282
MAY+G KVQKVMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+
Sbjct: 1 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60
Query: 283 AEEVHMKSKNRKQIGRIMMKGDNITLIQ 366
AEE+H K+K+RKQ+GRIM+KGDNITL+Q
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQ 88
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 153 bits (371), Expect = 4e-37
Identities = 69/88 (78%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = +1
Query: 106 MAYKGP-PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 282
MAY+G KVQKVMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+
Sbjct: 1 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60
Query: 283 AEEVHMKSKNRKQIGRIMMKGDNITLIQ 366
AEE+H K+K+RKQ+GRIM+KGDNITL+Q
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQ 88
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 149 bits (361), Expect = 6e-36
Identities = 67/88 (76%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 106 MAYKGP-PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 282
MAY G KVQKVMVQPINLIFRYLQNRS++Q+WLYE VN++IEG I+GFDEYMN+VLD+
Sbjct: 1 MAYSGQGQKVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMQIEGCIIGFDEYMNLVLDD 60
Query: 283 AEEVHMKSKNRKQIGRIMMKGDNITLIQ 366
AEE+H K+K+RKQ+GRIM+KGDNITL+Q
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQ 88
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 143 bits (346), Expect = 4e-34
Identities = 62/77 (80%), Positives = 74/77 (96%)
Frame = +1
Query: 136 KVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNR 315
KVMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+AEE+H K+K+R
Sbjct: 1 KVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSR 60
Query: 316 KQIGRIMMKGDNITLIQ 366
KQ+GRIM+KGDNITL+Q
Sbjct: 61 KQLGRIMLKGDNITLLQ 77
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 129 bits (312), Expect = 5e-30
Identities = 55/70 (78%), Positives = 67/70 (95%)
Frame = +1
Query: 157 NLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIM 336
NLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+AEE+H K+K+RKQ+GRIM
Sbjct: 19 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 78
Query: 337 MKGDNITLIQ 366
+KGDNITL+Q
Sbjct: 79 LKGDNITLLQ 88
>S60260-1|AAC60592.1| 104|Homo sapiens B-raf protein.
Length = 104
Score = 82.2 bits (194), Expect = 1e-15
Identities = 38/48 (79%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
Frame = +1
Query: 106 MAYKGP-PKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIV 246
MAY+G KVQKVMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+
Sbjct: 1 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCII 48
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 38.3 bits (85), Expect = 0.017
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 214 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 366
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 38.3 bits (85), Expect = 0.017
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 214 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 366
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 38.3 bits (85), Expect = 0.017
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 214 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 366
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 38.3 bits (85), Expect = 0.017
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 214 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 366
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 38.3 bits (85), Expect = 0.017
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 214 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 366
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 38.3 bits (85), Expect = 0.017
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 214 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 366
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 38.3 bits (85), Expect = 0.017
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 214 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 366
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 10 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 59
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 38.3 bits (85), Expect = 0.017
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 214 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 366
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 38.3 bits (85), Expect = 0.017
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 214 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 366
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 38.3 bits (85), Expect = 0.017
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 214 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 366
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 35.9 bits (79), Expect = 0.089
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Frame = +1
Query: 229 IEGHIVGFDEYMNIVLDEA-EEVHMKSKNRKQI--GRIMMKGDNITLI 363
I G + GFD+ +N++LDE+ E V S+ +Q+ G +++GDN+ +I
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVI 70
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 35.9 bits (79), Expect = 0.089
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Frame = +1
Query: 229 IEGHIVGFDEYMNIVLDEA-EEVHMKSKNRKQI--GRIMMKGDNITLI 363
I G + GFD+ +N++LDE+ E V S+ +Q+ G +++GDN+ +I
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVI 70
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 35.9 bits (79), Expect = 0.089
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Frame = +1
Query: 229 IEGHIVGFDEYMNIVLDEA-EEVHMKSKNRKQI--GRIMMKGDNITLI 363
I G + GFD+ +N++LDE+ E V S+ +Q+ G +++GDN+ +I
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVI 70
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 35.9 bits (79), Expect = 0.089
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Frame = +1
Query: 229 IEGHIVGFDEYMNIVLDEA-EEVHMKSKNRKQI--GRIMMKGDNITLI 363
I G + GFD+ +N++LDE+ E V S+ +Q+ G +++GDN+ +I
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVI 70
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 33.9 bits (74), Expect = 0.36
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Frame = +1
Query: 229 IEGHIVGFDEYMNIVLDEA-EEVHMKSKNRKQI--GRIMMKGDNI 354
I G + GFD+ +N++LDE+ E V S+ +Q+ G +++GDN+
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNV 67
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,027,708
Number of Sequences: 237096
Number of extensions: 1535706
Number of successful extensions: 6837
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 6748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6837
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5160237082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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