Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2m07
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 238 4e-63
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 227 7e-60
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 150 1e-36
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 30 2.1
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 6.5
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 28 8.6
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 238 bits (582), Expect = 4e-63
Identities = 110/199 (55%), Positives = 147/199 (73%)
Frame = +2
Query: 125 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 304
K VPESVLK + L + A++ ++ IF RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 305 RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 484
+L R+AR +G +YV EAKL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT
Sbjct: 67 QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126
Query: 485 VNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVED 664
+NMLR EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+ +N ++E+ L KH+IIC+ED
Sbjct: 127 INMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIED 186
Query: 665 LIHEIFTVGEKFKYASNFL 721
L+HEI TVG FK A+NFL
Sbjct: 187 LVHEIMTVGPHFKEANNFL 205
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 227 bits (555), Expect = 7e-60
Identities = 107/201 (53%), Positives = 146/201 (72%), Gaps = 6/201 (2%)
Frame = +2
Query: 137 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 316
VPESVL+ + + + +I+ ++ IF RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 317 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 496
+AR +G +YV E KL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70 EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 497 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR------LHKHNIICV 658
R EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+T+N ++E+ L KH+IIC+
Sbjct: 130 RRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICI 189
Query: 659 EDLIHEIFTVGEKFKYASNFL 721
EDL+HEI TVG FK A+NFL
Sbjct: 190 EDLVHEIMTVGPHFKEANNFL 210
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 150 bits (363), Expect = 1e-36
Identities = 79/207 (38%), Positives = 123/207 (59%), Gaps = 3/207 (1%)
Frame = +2
Query: 110 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 289
+E +++LP V E+VLK + +R + KR E +V+E+R K
Sbjct: 3 EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62
Query: 290 ERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGV 460
E D +R+ + + R P E +KL F IRI G + P +R++L+ RL Q+ GV
Sbjct: 63 ELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 120
Query: 461 FVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHK 640
F++ AT+ L + EP+I +G+PNLK+V++L+YK+G L + P+TSN ++EK L +
Sbjct: 121 FLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGE 180
Query: 641 HNIICVEDLIHEIFTVGEKFKYASNFL 721
+ IIC+EDL+HEI +VG F+ ASNFL
Sbjct: 181 YGIICLEDLVHEIASVGPHFREASNFL 207
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 203 TLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 343
TL+ R+ IK KRE+F KR E ++E ++ + E+ + A NR +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 348 PGKPNWHLSSESVVSTKFHRRSVKFCNCLDCAK 446
PG+ NW S +V TK R+S + N +D A+
Sbjct: 100 PGQANWFPDSNLLVDTKGRRQSRRIKNLMDEAE 132
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 511 LHCLGIPQLKECP*VSIQTWIRQAEW 588
LHC G+PQ+K +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,126,544
Number of Sequences: 37544
Number of extensions: 366738
Number of successful extensions: 842
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -