Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2m07
(723 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 276 2e-74
SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5) 30 1.7
SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34) 28 6.7
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37) 28 8.8
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_50079| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 276 bits (676), Expect = 2e-74
Identities = 134/203 (66%), Positives = 158/203 (77%)
Frame = +2
Query: 113 EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKE 292
+D K+P VPE++LK + L ++ K++EIFKRAE+YVKEYR KE
Sbjct: 3 QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62
Query: 293 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRL 472
DE+R+ + A+ GN+YVP EA+LAFVIRIRGIN VSPKVRK+LQL RLRQINNGVFVRL
Sbjct: 63 VDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLLRLRQINNGVFVRL 122
Query: 473 NKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNII 652
NKAT NMLRI +PYIA+GYPNLKSVREL+YKRG+ K+ QR+ +T NSIVEK L KH II
Sbjct: 123 NKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGII 182
Query: 653 CVEDLIHEIFTVGEKFKYASNFL 721
CVEDLIHEIFTVGE FK ASNFL
Sbjct: 183 CVEDLIHEIFTVGEHFKEASNFL 205
>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
Length = 546
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 312 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSV 416
P +HA T P + N H +S S +T RRSV
Sbjct: 318 PFRHATTTITVLPSRYNNHTASSSHATTTIQRRSV 352
>SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1150
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = -1
Query: 468 RTNTPLFIWRSLNSCRTLRTFGETWLIPRIRMTNANLASPGT**LPRLRACLASLISSRS 289
RT PLF L C R TW P + + + L + +A L+ +RS
Sbjct: 295 RTRAPLFYSFLLTGCTARRRENVTW-FPSMALAGSILLKQRCSDMNTTACIMAVLVKTRS 353
Query: 288 LMRYSLTY--CSALLKIS 241
+ ++ L + CS+ ++IS
Sbjct: 354 MEQFLLLFIVCSSEIQIS 371
>SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 712 TRVLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGE 572
T +E+F +DE + V E +LN DWY+LS + GE
Sbjct: 53 TIYVEIFDERSFSVDERVAWGLVQIREDVLNGETIDDWYSLSGKQGE 99
>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 215 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 340
R AI ++RE+++R E Y + + R+ R R R Y
Sbjct: 16 RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57
>SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34)
Length = 743
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -1
Query: 702 LNFSPTVKISWMRSSTQIMLCLWSL-FSTMLLEVIGIRCPLSLANPRLYTNSRTLFKLGY 526
L++S KI + + +T CLW L ++ GI+ PL +A PR+ ++ L LG
Sbjct: 369 LDWSGEDKIKFFKKATG---CLWPPEILKELGDIFGIKDPLKVATPRVLRRNQKL--LGM 423
Query: 525 PQ 520
P+
Sbjct: 424 PE 425
>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 215 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 340
R + ++REI++R E Y + + R+ RL R R Y
Sbjct: 27 RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68
>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
Length = 712
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 287 KERDEIRLARQARNRGNYYVP 349
K RD +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503
>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1981
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 305 RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRK 418
RL R + R NYY+ + +AF + I + + P R+
Sbjct: 1886 RLRRTEKRRQNYYIATQKLMAFALNIYEVLKDDPLTRR 1923
>SB_50079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -1
Query: 525 PQAM*GSAIRSIFTVALFRRTNTPLFIWRSLNSCRTLRTFG 403
P+ + + + +++V+L R N LF RSL SC RT+G
Sbjct: 428 PRVLCATLLPVVYSVSLDSRYNE-LFTGRSLQSCGNQRTWG 467
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,287,612
Number of Sequences: 59808
Number of extensions: 441364
Number of successful extensions: 1018
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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