Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2m04
         (730 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SI60 Cluster: Chromosome 5 SCAF14581, whole genome sh...    36   1.3  
UniRef50_Q5IJ48 Cluster: Crumbs homolog 2 precursor; n=17; Euthe...    35   1.8  
UniRef50_Q4SKZ5 Cluster: Chromosome 17 SCAF14563, whole genome s...    35   2.3  
UniRef50_Q75DX0 Cluster: ABL097Cp; n=1; Eremothecium gossypii|Re...    34   3.1  
UniRef50_UPI000065E81A Cluster: Homolog of Homo sapiens "Splice ...    34   4.1  
UniRef50_Q2RAK3 Cluster: Expressed protein; n=4; Oryza sativa|Re...    33   7.2  
UniRef50_Q4SW41 Cluster: Chromosome 3 SCAF13691, whole genome sh...    33   9.5  
UniRef50_Q0URD4 Cluster: Predicted protein; n=1; Phaeosphaeria n...    33   9.5  

>UniRef50_Q4SI60 Cluster: Chromosome 5 SCAF14581, whole genome shotgun
            sequence; n=3; Clupeocephala|Rep: Chromosome 5 SCAF14581,
            whole genome shotgun sequence - Tetraodon nigroviridis
            (Green puffer)
          Length = 991

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -1

Query: 610  PADLHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSVQECDSVLRLDGTGKVVINLT 440
            P  L  A P YSG H SPP     + G  +       Q  DS+ +LDG+    + L+
Sbjct: 861  PMHLSPATPHYSGHH-SPPLLNQTSNGNPSQAVLEFAQYLDSLFKLDGSSSPPLELS 916


>UniRef50_Q5IJ48 Cluster: Crumbs homolog 2 precursor; n=17;
            Eutheria|Rep: Crumbs homolog 2 precursor - Homo sapiens
            (Human)
          Length = 1285

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +3

Query: 459  LPVPSNRNTLSHSCTERHAQLFLPPAATVS-VEG--GDAC-APEYPGTAS-CKSAGVCSS 623
            LPVPS   +L+ +C +        PAA  S +EG  G  C  P  P  A+ C + G C +
Sbjct: 1131 LPVPSKECSLNVTCLDGSPCEGGSPAANCSCLEGLAGQRCQVPTLPCEANPCLNGGTCRA 1190

Query: 624  AGQQMDCVTN 653
            AG   +C+ N
Sbjct: 1191 AGGVSECICN 1200


>UniRef50_Q4SKZ5 Cluster: Chromosome 17 SCAF14563, whole genome
           shotgun sequence; n=5; Tetraodontidae|Rep: Chromosome 17
           SCAF14563, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 760

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 522 ITARGVRYKSATAYCD*TVPVK-WSLISRSHEYNYVLNNGSTELCHETSCGVGVLL 358
           +T RG+R K     C      K WSL     +Y++V NN ST++    S  +GV L
Sbjct: 391 VTYRGIRRKGNANECSLGWNDKSWSLYCSDSKYSFVHNNKSTDIAGPVSSRIGVYL 446


>UniRef50_Q75DX0 Cluster: ABL097Cp; n=1; Eremothecium gossypii|Rep:
           ABL097Cp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 119

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 320 CNYHRRDRAVCRKSKTPTPQDVSWHSSVE 406
           C++ +RD AVC K K P  QD+  H S +
Sbjct: 37  CDFRQRDLAVCIKQKVPVVQDIMKHCSAQ 65


>UniRef50_UPI000065E81A Cluster: Homolog of Homo sapiens "Splice
           Isoform 1 of Tripartite motif protein 16; n=1; Takifugu
           rubripes|Rep: Homolog of Homo sapiens "Splice Isoform 1
           of Tripartite motif protein 16 - Takifugu rubripes
          Length = 446

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 522 ITARGVRYKSATAYCD*TVPVK-WSLISRSHEYNYVLNNGSTELCHETSCGVGVLL 358
           +T RG+R K     C      K WSL     +Y++V NN ST++    S  +GV L
Sbjct: 360 VTYRGIRRKGNGNECSLGWNDKSWSLYCSDSKYSFVHNNKSTDIAGPVSSRIGVYL 415


>UniRef50_Q2RAK3 Cluster: Expressed protein; n=4; Oryza sativa|Rep:
           Expressed protein - Oryza sativa subsp. japonica (Rice)
          Length = 629

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 610 PADLHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSVQE 494
           PADL D + G  G+H  P ST+    G +   A  + +E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159


>UniRef50_Q4SW41 Cluster: Chromosome 3 SCAF13691, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 3
           SCAF13691, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 559

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
 Frame = +3

Query: 345 LCVGKARH----LRRRMSRGIVPWN-RCLEHNYT--REIVRLMTTLPVPSNRNTLSHSCT 503
           +CV + RH    +   +S G +P   RCLE N    R + R +  LP+ +  N    +  
Sbjct: 400 VCVWRIRHFFCSVCSSLSAGTLPVTFRCLEENLKIDRRVTRFV--LPIGATINMDGTALY 457

Query: 504 ERHAQLFLPPAATVSVEGGDACAPEYPGTASCKSAGVCSSAG 629
           E  A +F+     +S++GG         T +   A    SAG
Sbjct: 458 EAVAAIFIAQMNDISLDGGQIVTVSMTATLASVGAASIPSAG 499


>UniRef50_Q0URD4 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 246

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 432 REIVRLMTTLPVPSNRNTLSHSCTERHAQLFLP 530
           R  V L   LPVP + NT +H C  RH   + P
Sbjct: 81  RRRVHLPLALPVPQSSNTTAHPCCARHTPNWFP 113


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 725,510,010
Number of Sequences: 1657284
Number of extensions: 14444262
Number of successful extensions: 36937
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36922
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)