Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2m04
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    27   3.6  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   4.8  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    25   8.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   8.4  

>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
 Frame = +3

Query: 402  WNRCLEHNYTREI--VRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATVSVEGGDACAP 575
            WN  +   Y+  I  +R +    +P N   L           FL P+ T +V GG+    
Sbjct: 1016 WNAPIAITYSSVIYCLRSIINQDIPLNEGCLKPIEIRIPPSCFLNPSETAAVVGGNVLTS 1075

Query: 576  EYPGTASCKSAGVCSSAGQQMDCVTNRIIG 665
            +       K+  +C+++     C+ N   G
Sbjct: 1076 QRITDVILKAFSICAAS---QGCMNNLTFG 1102


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 320 CNYHRRDRAVCRKSKTPTPQDVSWHSSVEPLFRT*LYS*DREINDHFTGTV*SQY 484
           C  +    A  +   + +P ++S HS+ +PL  T + S   +  D F+G+  S +
Sbjct: 63  CEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQSNF 117


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 293 ARILDLEVCCNYHRRDRAVCRKSKTPTPQDVS 388
           A +L+ ++C NYH+R  AV      P   D +
Sbjct: 214 AGLLEEDLCANYHKRLEAVSLDFLPPAYNDTA 245


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 620 QCWSADGLRDEQDYWSIAGAI*TLTMETP 706
           QC S DG+ DE+D+     A+  + +  P
Sbjct: 264 QCLSVDGISDEKDFQGTMNAMKVIGITEP 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,123
Number of Sequences: 5004
Number of extensions: 60449
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)