Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2m04
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.31 
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_37133| Best HMM Match : rve (HMM E-Value=0.23)                      28   6.7  
SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 417 EHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAQL 521
           EH +T +I +L  T+P     NTL   C +RHA L
Sbjct: 545 EHAFTNDIEQLPFTIPRLEMLNTLLRECIDRHAPL 579


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +3

Query: 558 GDAC-APEYPGTASCKSAGVCSSAGQQMDCV--TNRIIGA 668
           GD C  P+  GT  C   GVC  +     C+  TN  +GA
Sbjct: 237 GDGCHVPDCLGTPDCNDNGVCDGSFDPPRCINCTNNTMGA 276


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -1

Query: 622  LLHTPADLHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSVQECDSVLRLDGT 464
            L  TP    D +PGY  +  S   TE   A  K   A++ V +   V RL  T
Sbjct: 1894 LEQTPPPTSDRIPGYEDSEGS--DTENEQAITKRKTAFQDVSDVHGVARLQDT 1944


>SB_37133| Best HMM Match : rve (HMM E-Value=0.23)
          Length = 359

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 538 QRFPSKGVTHVHLSTLEQRHANRRVCVAVLVSRW 639
           Q+   KG+TH +LS LE+    +R  +AV   RW
Sbjct: 109 QKTAYKGLTHANLSKLEE--VGQRAGLAVTAERW 140


>SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1273

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 498  CTERHAQLFLPPAATVSVEGGDAC-APEYPGTASCKSAGV 614
            C  R  QL+LP  AT  +EG  +C  P+  G      AGV
Sbjct: 1145 CDVRDDQLYLPAYATRPLEGQTSCKCPDVVGCGVMWPAGV 1184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,591,669
Number of Sequences: 59808
Number of extensions: 503466
Number of successful extensions: 2187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2183
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)