Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2m01
         (609 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    26   0.29 
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   2.7  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   8.1  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 122 LNSCFISFSSSVWCTVGSVCSTYR 193
           ++SC   FSSS WC   +  S  R
Sbjct: 135 VSSCHQGFSSSTWCNYSAYSSASR 158


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 326 PSRAISMRPRRCCTPKGICS 267
           P+RA+   P +C  P   CS
Sbjct: 149 PNRALDCDPTQCVLPDCFCS 168


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 166 GGLGLQHVPHLVVVGAAAIQRNQ 234
           GGL  +   H ++ GA    RNQ
Sbjct: 88  GGLTFETAAHKIMAGATKRFRNQ 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,766
Number of Sequences: 336
Number of extensions: 2849
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)