Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2m01
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0196 + 20835495-20837255                                         30   1.6  
11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549...    29   3.8  
03_06_0044 + 31255284-31256012                                         29   3.8  
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     28   5.0  
05_01_0051 - 345125-345693,345833-346925                               28   6.7  
01_05_0387 - 21695277-21695351,21696186-21696228,21696325-216964...    28   6.7  
07_01_0249 - 1844894-1845363,1845557-1848158                           27   8.8  

>02_04_0196 + 20835495-20837255
          Length = 586

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/22 (63%), Positives = 19/22 (86%), Gaps = 1/22 (4%)
 Frame = +1

Query: 334 IKLYCRLGVLEQAQRRL-SGGA 396
           +KLYC LG+L++A+R L SGGA
Sbjct: 120 LKLYCSLGLLDRARRVLYSGGA 141


>11_04_0430 +
           17653553-17654285,17654305-17654627,17654795-17654921,
           17655123-17655338,17655463-17655494
          Length = 476

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 157 VVHGGLGLQHVPH 195
           VV GGLG QH+PH
Sbjct: 241 VVQGGLGFQHIPH 253


>03_06_0044 + 31255284-31256012
          Length = 242

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
 Frame = +3

Query: 282 RRTAAS-WPHRNGPRRERN*------TLLSLGRLGAGSTPTVGRCTGATRVRKTNFAAPP 440
           RRTA   W  R   RR R+       T LS   +G G  P V    G TRV  +   A  
Sbjct: 57  RRTAGRIWRGRRSHRRRRHLDEAKTSTALSSSTIGGGGEPPVAGAAGETRVAGSEGGA-- 114

Query: 441 RWSSWSA*TTV*RLFCRVILFASA 512
            W   +A  T  ++    +L ASA
Sbjct: 115 -WRRRAAVATFTKVAPSALLTASA 137


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 410 CS*NQFCSSAALVILERMNNCITPILSSNIVCVCKYSGLPCLTC 541
           C+   F SS AL+IL    N   P + S  + VC   G+  L C
Sbjct: 638 CNSMSFMSSIALIILLVNPNLYRPAIRSYALSVCTAVGMFALLC 681


>05_01_0051 - 345125-345693,345833-346925
          Length = 553

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -1

Query: 315 HFYAATTLLYAERNLF 268
           HFYAA TLL   RNLF
Sbjct: 179 HFYAAATLLPCARNLF 194


>01_05_0387 -
           21695277-21695351,21696186-21696228,21696325-21696454,
           21696812-21697028,21697202-21697248,21698132-21698228,
           21698637-21698687,21698788-21698919,21699345-21699499,
           21700461-21700534,21700566-21700730,21701368-21701420
          Length = 412

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -1

Query: 243 TRRLVSLNCGRADDDQMRYVLQTEPTVHHTLLEKLMKQELRPYRNSGEVYCTDF 82
           T R +S    RA  D +R++L    ++H  ++EKL K  L       E+YC  F
Sbjct: 264 THRPLSEMMIRAATDDVRFLL----SIHEKMMEKLSKVSLWRLSVRSELYCRCF 313


>07_01_0249 - 1844894-1845363,1845557-1848158
          Length = 1023

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 339 TLLSLGRLGAGSTP-TVGRCTGATRVR 416
           TL++LG    G+ P ++G+CT  TRVR
Sbjct: 387 TLIALGNSLFGAIPASLGKCTSLTRVR 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,200,026
Number of Sequences: 37544
Number of extensions: 359919
Number of successful extensions: 1129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)