Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2m01
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    32   0.28 
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    32   0.28 
Z74031-8|CAA98451.1|  372|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U29377-9|AAA68718.3|  405|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical...    29   3.4  
AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U10402-10|AAA19064.1|  355|Caenorhabditis elegans Gro-1 operon g...    28   6.0  
AY052770-1|AAL14109.1|  355|Caenorhabditis elegans GOP-2 protein.      28   6.0  
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ...    28   6.0  
Z82274-5|CAB05227.1|  333|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U41533-7|AAA83170.1|  337|Caenorhabditis elegans Small glutamine...    27   7.9  
AL117193-5|CAB54985.1|  335|Caenorhabditis elegans Hypothetical ...    27   7.9  
AL117193-4|CAB54984.1|  335|Caenorhabditis elegans Hypothetical ...    27   7.9  
AL117193-3|CAB54983.1|  335|Caenorhabditis elegans Hypothetical ...    27   7.9  
AL117193-2|CAB54982.1|  335|Caenorhabditis elegans Hypothetical ...    27   7.9  
AF192746-1|AAF08804.1|  401|Caenorhabditis elegans synapsin prot...    27   7.9  
AC006743-3|AAF60504.2|  401|Caenorhabditis elegans Synapsin prot...    27   7.9  
AC006743-2|AAM97971.1|  474|Caenorhabditis elegans Synapsin prot...    27   7.9  

>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
            protein 4 protein.
          Length = 2104

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 401  GNTCS*NQFCSSAALVILERMNNCITPILSSNIVCVC--KYSGLPCLTCFSLLILI 562
            GN     + C+++   +     +CI   LSSN+ C C   Y+G  C T  S L LI
Sbjct: 1807 GNPSQPGRICAASLCGLCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSNLPLI 1862


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
            matrix receptor MUP-4 protein.
          Length = 2104

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 401  GNTCS*NQFCSSAALVILERMNNCITPILSSNIVCVC--KYSGLPCLTCFSLLILI 562
            GN     + C+++   +     +CI   LSSN+ C C   Y+G  C T  S L LI
Sbjct: 1807 GNPSQPGRICAASLCGLCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSNLPLI 1862


>Z74031-8|CAA98451.1|  372|Caenorhabditis elegans Hypothetical
           protein F32D8.8 protein.
          Length = 372

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/70 (24%), Positives = 35/70 (50%)
 Frame = +2

Query: 140 SFSSSVWCTVGSVCSTYRIWSSSARPQFRETSRRVKFVVWPILNRFLSAYSSVVAA*KWP 319
           ++S+ V+ T  + CS  + +  +    +R  SRR K   W IL+  ++  S ++ A  + 
Sbjct: 126 NYSTLVYVTSTNKCSDLKYYFQN----YRNNSRRQKPAKWDILSELMTWNSEILGALSFS 181

Query: 320 STGAELNFTV 349
             G  L++ +
Sbjct: 182 FDGVSLHYAM 191


>U29377-9|AAA68718.3|  405|Caenorhabditis elegans Hypothetical
           protein K05F1.1 protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +2

Query: 365 SRLNADCRAVHWGNTCS*NQFCSSAALVILERMNNCITPILSSNIVCVCKYSGLPCLTCF 544
           S L   C+ +   + C  ++FCS+  L + ++ NN    I S N+ C        C+   
Sbjct: 71  SSLKVTCKLL---SDCQPDEFCST--LGVCDKKNNECLYISSVNVTCKSDCESSTCILLN 125

Query: 545 SLLILIHAC 571
           ++   IH C
Sbjct: 126 NITKEIHCC 134


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 518 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 429
           C C+R  Y  T+   YSCSC    P ++SC
Sbjct: 39  CSCQRTTY--TQPQQYSCSCQNTAPVQKSC 66


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 518 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 429
           C C+R  Y  T+   YSCSC    P ++SC
Sbjct: 39  CSCQRTTY--TQPQQYSCSCQNTAPVQKSC 66


>AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical
           protein Y37E3.13 protein.
          Length = 472

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 594 GKYKCTFEQACINISKEKHVKQGN-PLYLQT 505
           GKYKC    A +N SKE HV++   P+ L +
Sbjct: 296 GKYKCVASLAGLNSSKEFHVERDKIPIVLNS 326


>AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical
           protein Y5H2A.4 protein.
          Length = 558

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 518 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 429
           C C+R  Y +T+   YSCSC    P + SC
Sbjct: 58  CSCQRTTY-TTQPQQYSCSCQNTAPVQASC 86


>Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical
           protein C16C10.5 protein.
          Length = 409

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 22/62 (35%), Positives = 28/62 (45%)
 Frame = -1

Query: 585 KCTFEQACINISKEKHVKQGNPLYLQTQTILLDKIGVIQLFMRSKMTNAAELQNWFYEHV 406
           KC F     +I K  H  +G+PLYL  ++I   KI  I    R     A  LQN   E +
Sbjct: 36  KCFFR----SIFKIGHFPRGSPLYLLEKSITFSKIISIFSGHRMGQHGAIRLQNEVQEGM 91

Query: 405 LP 400
            P
Sbjct: 92  PP 93


>U10402-10|AAA19064.1|  355|Caenorhabditis elegans Gro-1 operon gene
           protein 2 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 309 RNGPRRERN*TLLSLGRLGAGSTPTVGRCTGATRVRKT 422
           + GP   +  ++L LG  G+G T  V R T     RKT
Sbjct: 22  QTGPNVNQKPSILVLGMAGSGKTTFVQRLTAFLHARKT 59


>AY052770-1|AAL14109.1|  355|Caenorhabditis elegans GOP-2 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 309 RNGPRRERN*TLLSLGRLGAGSTPTVGRCTGATRVRKT 422
           + GP   +  ++L LG  G+G T  V R T     RKT
Sbjct: 22  QTGPNVNQKPSILVLGMAGSGKTTFVQRLTAFLHARKT 59


>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
           protein F25G6.9 protein.
          Length = 1373

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 355 GVLEQAQRRLSGGA-LGQHVFVKPILQLRRVGHLGAHE 465
           G+L  +Q+RL G   L Q+VF+K    L   GH   H+
Sbjct: 153 GLLSDSQKRLVGNCGLAQNVFLKHQPDLYPTGHESEHD 190


>Z82274-5|CAB05227.1|  333|Caenorhabditis elegans Hypothetical
           protein JC8.7 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 147 EKLMKQELRPYRN-SGEVYCTDFEHIKRALETC 52
           +K  K E   YR+ S   YC + EH+ R+L  C
Sbjct: 216 KKNKKNERTGYRDLSKNAYCINIEHLVRSLRLC 248


>U41533-7|AAA83170.1|  337|Caenorhabditis elegans Small
           glutamine-rich tetratricorepeat protein protein 1
           protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +1

Query: 214 AAIQRNQSPRQVCSLAD----LEQIPFGVQQRRGRIEMALDGSGIKLYCRLGVLEQAQRR 381
           AAI+ N+ P   C+ A     LEQ    +Q  R    +ALD S  K + R+G+    Q R
Sbjct: 130 AAIKLNRDPVYFCNRAAAYCRLEQYDLAIQDCR--TALALDPSYSKAWGRMGLAYSCQNR 187

Query: 382 LSGGA 396
               A
Sbjct: 188 YEHAA 192


>AL117193-5|CAB54985.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.6 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 518 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 429
           C C+R  Y  T+   YSCSC    P + SC
Sbjct: 39  CSCQRTTY--TQPQQYSCSCQNTAPVQTSC 66


>AL117193-4|CAB54984.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.5 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 518 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 429
           C C+R  Y  T+   YSCSC    P + SC
Sbjct: 39  CSCQRTTY--TQPQQYSCSCQNTAPVQTSC 66


>AL117193-3|CAB54983.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.4 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 518 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 429
           C C+R  Y  T+   YSCSC    P + SC
Sbjct: 39  CSCQRTTY--TQPQQYSCSCQNTAPVQTSC 66


>AL117193-2|CAB54982.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.3 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 518 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 429
           C C+R  Y  T+   YSCSC    P + SC
Sbjct: 39  CSCQRTTY--TQPQQYSCSCQNTAPVQTSC 66


>AF192746-1|AAF08804.1|  401|Caenorhabditis elegans synapsin
           protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 454 QDDQRGGAAKLVLRTRVAPVHRPTVGVEPAPRRPSDSKV 338
           +DD+R  AA L+LR  VAP     +  EP    P+ S V
Sbjct: 284 EDDRR--AASLLLRALVAPRITSPIAAEPPATSPTTSAV 320


>AC006743-3|AAF60504.2|  401|Caenorhabditis elegans Synapsin protein
           1, isoform a protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 454 QDDQRGGAAKLVLRTRVAPVHRPTVGVEPAPRRPSDSKV 338
           +DD+R  AA L+LR  VAP     +  EP    P+ S V
Sbjct: 284 EDDRR--AASLLLRALVAPRITSPIAAEPPATSPTTSAV 320


>AC006743-2|AAM97971.1|  474|Caenorhabditis elegans Synapsin protein
           1, isoform b protein.
          Length = 474

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 454 QDDQRGGAAKLVLRTRVAPVHRPTVGVEPAPRRPSDSKV 338
           +DD+R  AA L+LR  VAP     +  EP    P+ S V
Sbjct: 357 EDDRR--AASLLLRALVAPRITSPIAAEPPATSPTTSAV 393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,207,009
Number of Sequences: 27780
Number of extensions: 282623
Number of successful extensions: 1034
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)