Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2l20
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    28   1.5  
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    28   1.5  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    26   4.5  

>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = -1

Query: 392 LQTYTPFSTLKRDTEISICIMLSPQKTNIRH*CFQNLNEYLLTEVSRPPRLKITKNEIIA 213
           +  Y PF T K   +I+I       +TNIR   F +  E L  +     R ++  NE+  
Sbjct: 106 IPNYAPFETEKSALDITIMTYNVLAQTNIRRSMFPHSGEALKWK----NRSRMLANELTY 161

Query: 212 ISPHVDC 192
            SP + C
Sbjct: 162 YSPTLGC 168


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = -2

Query: 181 KFNQFC*TQTRRCLGKRQECVKEEIQTMESKEIEEKQR 68
           KF  +C  +  R + + +  V+ +++++E+KE+EEK +
Sbjct: 56  KFQDYCDLEEIRII-EAKRVVERDLRSLEAKEVEEKSQ 92


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 190 SDPKFNQFC*TQTRRCLGKRQECVKEEIQTMESKEIEEKQRGK 62
           +D  + +F   Q  RCL +  +C+++ ++ + S  IE    GK
Sbjct: 75  TDAPWRKFSSAQRGRCLSRLADCIEQNLEYLAS--IETLDNGK 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,618
Number of Sequences: 5004
Number of extensions: 46934
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)