Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2l20
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.4  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 69  LCFSSISFDSIVW 107
           +C S+ISF +IVW
Sbjct: 172 ICSSAISFPAIVW 184


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 219 HRDIAARGLLVIQNLISSV 163
           HRD+AAR +LV   L+  +
Sbjct: 758 HRDLAARNVLVNAALVCKI 776


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 103 FGFPL*HIPDVYQGIFLFVFNR 168
           F  P  ++PD Y+ +   VFNR
Sbjct: 30  FDIPPDYLPDRYRSVATQVFNR 51


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 455 TPSTLAELMIPYLTEIITSCHHYMIFNH 538
           T   + E  + Y TE +   H Y + NH
Sbjct: 210 TKHNVPEQRLNYFTEDVGLNHFYFMLNH 237


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 455 TPSTLAELMIPYLTEIITSCHHYMIFNH 538
           T   + E  + Y TE +   H Y + NH
Sbjct: 210 TKHNVPEQRLNYFTEDVGLNHFYFMLNH 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,123
Number of Sequences: 438
Number of extensions: 3058
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)