Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2l19
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    27   3.4  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   4.5  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    25   7.8  

>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
 Frame = +3

Query: 402  WNRCLEHNYTREI--VRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATVSVEGGDACAP 575
            WN  +   Y+  I  +R +    +P N   L           FL P+ T +V GG+    
Sbjct: 1016 WNAPIAITYSSVIYCLRSIINQDIPLNEGCLKPIEIRIPPSCFLNPSETAAVVGGNVLTS 1075

Query: 576  EYPGTASCKSAGVCSSAGQQMDCVTNRIIG 665
            +       K+  +C+++     C+ N   G
Sbjct: 1076 QRITDVILKAFSICAAS---QGCMNNLTFG 1102


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 320 CNYHRRDRAVCRKSKTPTPQDVSWHSSVEPLFRT*LYS*DREINDHFTGTV*SQY 484
           C  +    A  +   + +P ++S HS+ +PL  T + S   +  D F+G+  S +
Sbjct: 63  CEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQSNF 117


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 293 ARILDLEVCCNYHRRDRAVCRKSKTPTPQDVS 388
           A +L+ ++C NYH+R  AV      P   D +
Sbjct: 214 AGLLEEDLCANYHKRLEAVSLDFLPPAYNDTA 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,848
Number of Sequences: 5004
Number of extensions: 56030
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)