Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2l18
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 29 0.90
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.1
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 27 2.7
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 26 4.8
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 6.3
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.3
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 8.4
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.4
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|... 25 8.4
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 28.7 bits (61), Expect = 0.90
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = -3
Query: 637 KNTL*NSTFIVFNCCMTKSRLLLSRVYTISSMMRLRKCMVSHMVVNV*VKLLGWHERKLS 458
+NTL ++ + + +L+LSR+Y ++ LR + + + N KL + RK S
Sbjct: 225 QNTLSYELSGLYEKLLPRYQLVLSRIYPYAAASNLRNLLSLYRLPNCFGKLNSFDLRKGS 284
Query: 457 SVVLSINSM 431
S L +SM
Sbjct: 285 STSLKRSSM 293
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 27.5 bits (58), Expect = 2.1
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +3
Query: 327 FACLMKYKDIQKYEVQQLIEWAINASPDMDLQQ--FRIEFMDKTT--ELNLRSCQPKSFT 494
F L + DI YE+ I+ AIN+S L+ R+ D TT E L + P+ F
Sbjct: 567 FNFLERTSDISAYEIACAIKTAINSSKVKLLRSALARLSLFDSTTSREALLLAFVPEDFD 626
Query: 495 YTFTTI 512
F T+
Sbjct: 627 SLFKTL 632
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 336 LMKYKDIQKYEVQQLIEWAINASPDMDLQQFRIEFMDKTTELNLRSCQ 479
LM K + VQ+++ +AIN S + DL+ + T N+R Q
Sbjct: 495 LMNGKGNDEELVQKVLNYAINQSSNQDLRDRAFAYQRLLTPENVRKAQ 542
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/66 (22%), Positives = 34/66 (51%)
Frame = +3
Query: 450 TTELNLRSCQPKSFTYTFTTIWDTMHFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYN 629
TTE +++ K T T + ++ HFL + + + ++T ++ + F + ++ + N
Sbjct: 328 TTECHIQ-IPDKEATITVGSNFEVDHFLKISVGNKLWTLNRVEIPFKIISANSLSLEQEN 386
Query: 630 VFFILQ 647
VF L+
Sbjct: 387 VFLNLE 392
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 109 DADEPIIYFENITECLTDDQCDKFTYFAELK 17
DAD I+ NI LT ++CD+F Y +K
Sbjct: 1023 DADYAIL---NILNLLTSNECDEFDYSVLMK 1050
>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 119
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 491 YLHVYHHMGHHALSQSHHRRYGVYARQKQSRFC 589
++H+YH+ H + S Y AR S FC
Sbjct: 34 HMHLYHYEHIHLFTSSQSYMYHPNARFSYSPFC 66
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = -2
Query: 317 VSCLRRQQFGKVRRFRSSQKVYETKRIQQIAVFVTRKKRRQRYHGD*Q 174
+SC ++Q + + FR + Q++ +R KR+ Y+ D Q
Sbjct: 288 ISCFKKQPYNNPKFFRRKVDLINKFIGQRLMETYSRNKRKHYYNNDWQ 335
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +3
Query: 222 DSYLLYSFRLIDLLRASKSAHLTKLLSS--QATYLYHFACLMKYKDIQK 362
+S+ +SF + L S H+ K LSS A + H CL + + K
Sbjct: 28 NSFFPHSFMFVKSLHLMTSQHIFKCLSSCNYALSILHNICLASFLYLSK 76
>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/60 (21%), Positives = 27/60 (45%)
Frame = +3
Query: 324 HFACLMKYKDIQKYEVQQLIEWAINASPDMDLQQFRIEFMDKTTELNLRSCQPKSFTYTF 503
+ AC Y D +K E + +I W + + FR + + + ++R+ + K + F
Sbjct: 323 NIACEPMYIDYRKDETEAIIRWKTPLHAETCINAFRTQERKQNSHDDIRAHRKKGSSRPF 382
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,529
Number of Sequences: 5004
Number of extensions: 63900
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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