Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2l18
         (729 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    25   1.8  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    25   2.4  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    25   3.2  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    25   3.2  
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    24   5.5  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
 Frame = +3

Query: 423 QFRIEFMDKTTELNLRSCQPKSFTYTFTTIWDTMHFLSLIIDDMVYTR-DKSSLDFVMQQ 599
           Q  +  +D+  E N+         +  +  WD +  +  + ++  YT  D+  LD     
Sbjct: 175 QVDLRHIDEMNETNVVEVGVDLSEFYTSVEWDILE-VPAVRNEKFYTCCDEPYLDITFNI 233

Query: 600 LKTMKVLFYNVFFILQC 650
               K LFY V  I+ C
Sbjct: 234 TMRRKTLFYTVNLIIPC 250


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 569 VSRIHHIVDD-ETEKVHGVPYGGKRVSKTLGLARTQIE 459
           ++R+H  ++D E+ ++    YG +R   T+GL +  +E
Sbjct: 508 LNRLHEFLEDPESPRLSDRQYGFRRGCSTIGLIQRVVE 545


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = +3

Query: 432 IEFMDKTTELNLRSCQPKSFTYTFTTIWDTMHFLSLIIDDMVYTR-DKSSLDFVMQQLKT 608
           +  MD+ +  N+         +  +  WD +  +  + ++  YT  D+  LD        
Sbjct: 182 LRHMDEKSGSNIVDVGVDLSEFYMSVEWDILE-VPAVRNEKFYTCCDEPYLDITFNITMR 240

Query: 609 MKVLFYNVFFILQC 650
            K LFY V  I+ C
Sbjct: 241 RKTLFYTVNIIIPC 254


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = +3

Query: 432 IEFMDKTTELNLRSCQPKSFTYTFTTIWDTMHFLSLIIDDMVYTR-DKSSLDFVMQQLKT 608
           +  MD+ +  N+         +  +  WD +  +  + ++  YT  D+  LD        
Sbjct: 182 LRHMDEKSGSNIVDVGVDLSEFYMSVEWDILE-VPAVRNEKFYTCCDEPYLDITFNITMR 240

Query: 609 MKVLFYNVFFILQC 650
            K LFY V  I+ C
Sbjct: 241 RKTLFYTVNIIIPC 254


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 494 LHVYHHMGHHALSQSH 541
           LH +HH GHHA   +H
Sbjct: 348 LH-HHHPGHHAALHAH 362


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 792,274
Number of Sequences: 2352
Number of extensions: 16416
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)