Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2l05
         (201 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    25   1.4  
SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |...    24   2.4  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    23   7.3  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    23   7.3  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    22   9.7  

>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 183 NTNVYFHCSKQFNRESLMIERIDRDWSKNSLQRR 82
           N    F  SK   RE+LMI R   DW ++S+ R+
Sbjct: 430 NVLTKFGSSKIIGREALMIYRALHDW-RDSVARK 462


>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 12/53 (22%)
 Frame = +3

Query: 57  IIYDYLVTCVVVTNFSTNL-----DLYVRSL-------VILC*IVCYSENKRL 179
           II   LV C++V N+ST++     DL V+++        + C I+ Y+E +R+
Sbjct: 340 IICYILVLCLIVDNYSTDVLTLANDLNVKTMKANELFRTVGCRIMAYTETQRM 392


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 98  IRYNDARDQVIIDNTHKLVTGNNRSD 21
           + YN A    +I    K++ G+ RSD
Sbjct: 150 LTYNPAHPWSVIPEDRKVLVGSTRSD 175


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 71  VIIDNTHKLVTGNNRSDRYS 12
           V+I++ + +  GNNR ++YS
Sbjct: 143 VLIESGYDVWLGNNRGNKYS 162


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 110 IGRKIRYNDARDQVIIDNTHKLVT 39
           +GR + YND+R+  II     + T
Sbjct: 278 MGRVVDYNDSRESSIISCQSPITT 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 766,279
Number of Sequences: 5004
Number of extensions: 11294
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)