Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2l05
         (201 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0095 + 41053562-41053603,41054609-41054846,41055064-410553...    27   1.6  
01_06_0101 + 26443080-26443172,26444063-26445139,26445226-26445804     25   8.4  

>01_07_0095 +
           41053562-41053603,41054609-41054846,41055064-41055312,
           41055419-41055469,41056044-41056256,41056305-41056367,
           41056422-41056474,41056953-41057067,41057150-41057404,
           41057531-41058618
          Length = 788

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 57  IIYDYLVTCV--VVTNFSTNLDLYVRSLVILC 146
           +IY  LVT V  + T+F+TNL  +   LV LC
Sbjct: 537 LIYTELVTGVPNIFTHFTTNLPAFHEVLVFLC 568


>01_06_0101 + 26443080-26443172,26444063-26445139,26445226-26445804
          Length = 582

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 48  FMCIIYDYLVTCVVVTNFSTNLDLYVRSLV 137
           FM ++ D L  CV +T+F      Y R+ V
Sbjct: 263 FMGLLNDILANCVQLTDFRVAFSSYYRAKV 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,280,023
Number of Sequences: 37544
Number of extensions: 56534
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)