Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2l05
         (201 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132895-2|CAC14404.1|  613|Caenorhabditis elegans Hypothetical ...    27   1.4  
U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cycla...    27   2.4  
AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor typ...    27   2.4  
AF099914-3|AAC68758.2|  265|Caenorhabditis elegans Hypothetical ...    25   7.4  
AF022972-13|AAC48241.2|  527|Caenorhabditis elegans Udp-glucuron...    25   7.4  
AC087079-14|AAM81101.1|  392|Caenorhabditis elegans Nuclear pore...    25   7.4  

>AL132895-2|CAC14404.1|  613|Caenorhabditis elegans Hypothetical
           protein Y59A8A.2 protein.
          Length = 613

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 171 YFHCSKQFNRESLM-IERIDRDWSKNSLQRRT 79
           YF C K  NR++L   +R   DW K+  +R T
Sbjct: 276 YFFCKKHTNRDNLKPYQRKFDDWEKSEARRIT 307


>U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cyclase
           protein 8 protein.
          Length = 1206

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 147 NRESLMIERIDRDWSKNSLQRR 82
           NRE   + R+D+DW + +  RR
Sbjct: 805 NREKNRVRRVDQDWMRQTQTRR 826


>AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor type
           guanyly cyclase protein.
          Length = 1152

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 147 NRESLMIERIDRDWSKNSLQRR 82
           NRE   + R+D+DW + +  RR
Sbjct: 751 NREKNRVRRVDQDWMRQTQTRR 772


>AF099914-3|AAC68758.2|  265|Caenorhabditis elegans Hypothetical
           protein C40A11.4 protein.
          Length = 265

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 195 FWTFNTNVYFHCSKQFNRESLMIERIDRDWSKNS 94
           FW ++ N  FH   +F+R   + E     W  +S
Sbjct: 230 FWLYSANRGFHTFDEFSRFKQLFEMRIMKWKDDS 263


>AF022972-13|AAC48241.2|  527|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein41 protein.
          Length = 527

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
 Frame = -2

Query: 194 FGHSIQTFIFTVANNLTE-NH**SNV*IEIGRKIR----YNDARDQVIIDNT--HKLVTG 36
           FGHS  TF+  +A++LTE  H  + + I I  K R        +D V+++ T     +T 
Sbjct: 28  FGHSHSTFMGKLADSLTEAGHNVTVLSIIISSKFRNISYTKSTKDIVVVETTTEQDQLTE 87

Query: 35  NNRSDRYS 12
           N  +D ++
Sbjct: 88  NMENDDFA 95


>AC087079-14|AAM81101.1|  392|Caenorhabditis elegans Nuclear pore
           complex protein protein13, isoform b protein.
          Length = 392

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 192 WTFNTNVYFHCSKQF 148
           WT   +++FHCS  F
Sbjct: 375 WTIGISIFFHCSLAF 389


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,166,258
Number of Sequences: 27780
Number of extensions: 62235
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 12,740,198
effective HSP length: 46
effective length of database: 11,462,318
effective search space used: 229246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)