Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2l01
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0542 - 11352655-11352759,11353320-11353496,11353589-113536...    31   1.2  
10_08_0631 - 19435796-19436452,19437237-19438130                       29   2.9  
10_01_0287 - 2982618-2982810,2983111-2983196                           29   2.9  
05_03_0603 - 16117695-16118396,16118679-16118939,16120100-161201...    28   8.7  
05_01_0122 - 842013-842163,842439-843168,844307-844505                 28   8.7  

>02_02_0542 -
           11352655-11352759,11353320-11353496,11353589-11353699,
           11355606-11355667,11355739-11355941,11357109-11357281
          Length = 276

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 296 RAVMTASMRMIAPAFFTSTSRHFSKARGFIPLLILST 186
           + V   + R+I   +F S  RH+ +  G++P ++ ST
Sbjct: 159 KCVQQGASRVIVSPYFLSPGRHWKQVDGYLPYVLFST 195


>10_08_0631 - 19435796-19436452,19437237-19438130
          Length = 516

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -3

Query: 721 EQIRQKAPPLSKFR*HLQCSNNPVRHAVHLLTSTATHTRRFS*RCSRVLKC 569
           ++I+  A PLSK R HL CSN P   +  + T T  + R       +V++C
Sbjct: 466 DEIQVSASPLSK-RWHLVCSNIPNNISYLVSTFTLANCRTTDIGTKKVMQC 515


>10_01_0287 - 2982618-2982810,2983111-2983196
          Length = 92

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 620 CYTHPPIFMTLFQGTQVHMRHP 555
           CY H P++  L  G Q+   HP
Sbjct: 38  CYIHKPVYQELLHGDQLRFTHP 59


>05_03_0603 -
           16117695-16118396,16118679-16118939,16120100-16120144,
           16120362-16120453,16120568-16120706,16121027-16121063,
           16121147-16121434,16122000-16122074,16122505-16122581,
           16123092-16123256,16123387-16123543,16124558-16124733,
           16124828-16124940,16125398-16125428,16126487-16126605,
           16126696-16126789,16127384-16127458,16127548-16127666,
           16127751-16127907,16129252-16129398
          Length = 1022

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 621 LLHTPADFHD-AVPGYSSAHASPPSTETVAAGGKNNCAWRSVQECDSALR 475
           L H P  F + + P    A A PP  ++      +NC  +S ++ DS ++
Sbjct: 667 LFHFPEPFDEGSTPACFRAKACPPKIQSYVLPPFHNCEHKSTEKDDSKIK 716


>05_01_0122 - 842013-842163,842439-843168,844307-844505
          Length = 359

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 199 RSGIKPRAFEK*RDVDVKNAGAIILIDAVMTARILDLGVCCNYHRRD 339
           R G+     E   DVD+KN G +++++      + ++G+  +  R D
Sbjct: 189 REGMALNCLEAPLDVDIKNGGRVVVLNTANLPMVKEVGLGADLVRID 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,699,629
Number of Sequences: 37544
Number of extensions: 411420
Number of successful extensions: 1113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)