Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2k21
         (725 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VLJ9 Cluster: 39S ribosomal protein L51, mitochondria...   181   2e-44
UniRef50_UPI00015B4107 Cluster: PREDICTED: similar to mitochondr...   163   4e-39
UniRef50_Q22438 Cluster: 39S ribosomal protein L51, mitochondria...    75   2e-12
UniRef50_Q5D9U3 Cluster: SJCHGC03337 protein; n=1; Schistosoma j...    74   4e-12
UniRef50_UPI00005878E2 Cluster: PREDICTED: hypothetical protein;...    71   2e-11
UniRef50_UPI000065F9AE Cluster: 39S ribosomal protein L51, mitoc...    61   2e-08
UniRef50_Q4U2R6 Cluster: 39S ribosomal protein L51, mitochondria...    60   4e-08
UniRef50_A2STE6 Cluster: Polar amino acid ABC transporter, inner...    36   1.3  
UniRef50_Q5FHD8 Cluster: Putative uncharacterized protein; n=2; ...    35   2.4  
UniRef50_Q8W333 Cluster: Putative transposon protein; n=2; Oryza...    34   3.1  
UniRef50_Q09AY6 Cluster: Putative uncharacterized protein; n=1; ...    33   5.4  
UniRef50_Q0V696 Cluster: Predicted protein; n=1; Phaeosphaeria n...    33   5.4  
UniRef50_Q9X1C4 Cluster: Antibiotic ABC transporter, transmembra...    33   9.5  

>UniRef50_Q9VLJ9 Cluster: 39S ribosomal protein L51, mitochondrial
           precursor; n=6; Endopterygota|Rep: 39S ribosomal protein
           L51, mitochondrial precursor - Drosophila melanogaster
           (Fruit fly)
          Length = 174

 Score =  181 bits (440), Expect = 2e-44
 Identities = 92/172 (53%), Positives = 120/172 (69%), Gaps = 18/172 (10%)
 Frame = +3

Query: 150 MSWLTSRI--------LSVVWKPTVNVVRTRY------HADKKR---LVRRYGYQEKIWR 278
           MSWL S I        L+V  KP   +  T Y      HA+++     VRRYGY++KI++
Sbjct: 1   MSWLGSMIQKLGRATLLAVGGKPLAPMASTSYTVRQLSHAERRARGPTVRRYGYEDKIFK 60

Query: 279 GGLLPRSE-GKALPIPEYRPDNPWSVRKALFGQNDYIDILGPGNLHPVKTLYNIPSWIRG 455
            GLLP  + G+ LP+P YRP N WS ++ALFGQNDYIDILG   LHPVK LY++PSW+RG
Sbjct: 61  SGLLPHVDNGQKLPMPVYRPKNAWSKKRALFGQNDYIDILGNDRLHPVKVLYSLPSWLRG 120

Query: 456 VSGHEYHILLRKKKMWAKTGTPRLRPTKWKEIQKRLSFLYRKLNRKTKTGPS 611
           VSG+EY +LLRK+K+  K+  P  RPTKW+E++KR+ +LY+ LNRKTKTG S
Sbjct: 121 VSGNEYQVLLRKRKLLEKSKYPIARPTKWREMEKRILYLYKFLNRKTKTGYS 172


>UniRef50_UPI00015B4107 Cluster: PREDICTED: similar to mitochondrial
           ribosomal protein, L51, putative isoform 1; n=1; Nasonia
           vitripennis|Rep: PREDICTED: similar to mitochondrial
           ribosomal protein, L51, putative isoform 1 - Nasonia
           vitripennis
          Length = 161

 Score =  163 bits (396), Expect = 4e-39
 Identities = 83/156 (53%), Positives = 106/156 (67%), Gaps = 5/156 (3%)
 Frame = +3

Query: 150 MSWLTSRILSV--VWKPTVNVVRTRYHADKKRLVRRYGYQEKIWRGGLLPRSEG-KAL-P 317
           MS LT+ + +   VW P +  VR RY ADKKRL+R YGY+E + + GLL  + G K + P
Sbjct: 1   MSNLTNFVSTALKVWVPQMTTVRFRYWADKKRLIRNYGYKEILNQKGLLAHTGGDKPIRP 60

Query: 318 IPEYRPDNPWSVRKALFGQNDYIDILGPGNLHPVKTLYNIPSWIRGVSG-HEYHILLRKK 494
           +P YRPDN WS RKALFGQNDYIDILG   L   K +YN+P W+RGV G +E  +L+RKK
Sbjct: 61  MPIYRPDNSWSERKALFGQNDYIDILGTQELPVTKIMYNVPKWLRGVRGDNELQVLIRKK 120

Query: 495 KMWAKTGTPRLRPTKWKEIQKRLSFLYRKLNRKTKT 602
           K       P  RPTKWKE+  R+ +LY+ +NRKT+T
Sbjct: 121 KALRLGVYPIARPTKWKELNSRIMYLYKFMNRKTRT 156


>UniRef50_Q22438 Cluster: 39S ribosomal protein L51, mitochondrial
           precursor; n=2; Caenorhabditis|Rep: 39S ribosomal
           protein L51, mitochondrial precursor - Caenorhabditis
           elegans
          Length = 199

 Score = 74.9 bits (176), Expect = 2e-12
 Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 7/118 (5%)
 Frame = +3

Query: 255 GYQEKIWRGGL--LPRSEGKALPI--PEYRPDNPWSVRKALFGQNDYIDILGPGNLHPVK 422
           GY  +  + G+  LPR     +P+  P Y+  + WS   A FGQNDYID+LG G++HP +
Sbjct: 45  GYTFRYHQQGVDPLPRIPDCKVPVARPAYKVRDQWSDEAARFGQNDYIDLLGDGSVHPAQ 104

Query: 423 TLYNIPSWIRGVSGHEYHILLRKKKMWAKTGTPRLR---PTKWKEIQKRLSFLYRKLN 587
             Y+ P+W+RG  G      L K   +      +L+   P +W E++KR+ +L  + N
Sbjct: 105 LQYHTPTWLRGFPGQHKANELIKLIHYRNLYDAKLKQNSPKRWHELRKRIKYLMMQHN 162


>UniRef50_Q5D9U3 Cluster: SJCHGC03337 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC03337 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 134

 Score = 73.7 bits (173), Expect = 4e-12
 Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
 Frame = +3

Query: 258 YQEKIWRGGLLPRSE--GKALPIPEYRPDNPWSVRKALFGQNDYIDILGPGNLHPVKTLY 431
           Y  +++ GGLLPR +   K + +PE++P + WS  +A FGQNDYIDILG G + P +  Y
Sbjct: 10  YNPRMYDGGLLPRLDYTDKQVLLPEHKPRDLWSPHRAYFGQNDYIDILGDGKIKP-RDFY 68

Query: 432 NIPSWIRGVSGHEYHILLRKKKMWAKTGTPRLRPTKWKEIQKRLSFLYRKLNRK 593
             P W  G       +  R              P+K     K   +L++K+N++
Sbjct: 69  TGPPWALGARNEYQRVCSRLNNPAIVAWMEEFEPSKLTAELKLQRYLFKKVNKR 122


>UniRef50_UPI00005878E2 Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 126

 Score = 71.3 bits (167), Expect = 2e-11
 Identities = 37/95 (38%), Positives = 55/95 (57%)
 Frame = +3

Query: 306 KALPIPEYRPDNPWSVRKALFGQNDYIDILGPGNLHPVKTLYNIPSWIRGVSGHEYHILL 485
           K LP P+    + WS ++ALFG+NDY DILG G     K +   P W+RG  G+E  +++
Sbjct: 25  KKLPAPKKSEKDYWSEKRALFGENDYKDILGDGTYSLRKNVKVGPWWMRGWKGNELQMMI 84

Query: 486 RKKKMWAKTGTPRLRPTKWKEIQKRLSFLYRKLNR 590
           RK+KM      P  R      + KR+S+L++ +NR
Sbjct: 85  RKRKMVGYQMGPETR----HNMNKRISYLFKFMNR 115


>UniRef50_UPI000065F9AE Cluster: 39S ribosomal protein L51,
           mitochondrial precursor (L51mt) (MRP-L51) (bMRP64)
           (bMRP-64).; n=1; Takifugu rubripes|Rep: 39S ribosomal
           protein L51, mitochondrial precursor (L51mt) (MRP-L51)
           (bMRP64) (bMRP-64). - Takifugu rubripes
          Length = 131

 Score = 61.3 bits (142), Expect = 2e-08
 Identities = 33/94 (35%), Positives = 51/94 (54%)
 Frame = +3

Query: 318 IPEYRPDNPWSVRKALFGQNDYIDILGPGNLHPVKTLYNIPSWIRGVSGHEYHILLRKKK 497
           IP  R  + W+ +++++G  D I ILG    HP K +   P W++G  G+E   L++KKK
Sbjct: 41  IPPLRTVDRWTEKRSMYGVYDNIGILGDFKAHP-KDVIIAPCWLKGFKGNELQRLIQKKK 99

Query: 498 MWAKTGTPRLRPTKWKEIQKRLSFLYRKLNRKTK 599
           M       R+       ++KR+ FLYR+ NR  K
Sbjct: 100 MVGH----RMMTEDRHNLEKRIRFLYRRFNRTGK 129


>UniRef50_Q4U2R6 Cluster: 39S ribosomal protein L51, mitochondrial
           precursor; n=17; Euteleostomi|Rep: 39S ribosomal protein
           L51, mitochondrial precursor - Homo sapiens (Human)
          Length = 128

 Score = 60.5 bits (140), Expect = 4e-08
 Identities = 37/104 (35%), Positives = 55/104 (52%)
 Frame = +3

Query: 288 LPRSEGKALPIPEYRPDNPWSVRKALFGQNDYIDILGPGNLHPVKTLYNIPSWIRGVSGH 467
           +PR  G  L +P  +  + W+ ++A+FG  D I ILG    HP K L   P W+RG  G+
Sbjct: 28  VPRLIGIRLTLPPPKVVDRWNEKRAMFGVYDNIGILGNFEKHP-KELIRGPIWLRGWKGN 86

Query: 468 EYHILLRKKKMWAKTGTPRLRPTKWKEIQKRLSFLYRKLNRKTK 599
           E    +RK+KM    G+ R+       + KR+ +LY+  NR  K
Sbjct: 87  ELQRCIRKRKM---VGS-RMFADDLHNLNKRIRYLYKHFNRHGK 126


>UniRef50_A2STE6 Cluster: Polar amino acid ABC transporter, inner
           membrane subunit; n=3; Methanomicrobiales|Rep: Polar
           amino acid ABC transporter, inner membrane subunit -
           Methanocorpusculum labreanum (strain ATCC 43576 / DSM
           4855 / Z)
          Length = 228

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 24/95 (25%), Positives = 46/95 (48%)
 Frame = +3

Query: 243 VRRYGYQEKIWRGGLLPRSEGKALPIPEYRPDNPWSVRKALFGQNDYIDILGPGNLHPVK 422
           +R   YQ +I+RG +   SEG+ L           ++R  +  Q+  + + G  N +PV 
Sbjct: 98  LRSAAYQSQIFRGAIQSLSEGQMLAARSLGMTKWQAIRSIILPQSLRLSLPGWSNEYPVL 157

Query: 423 TLYNIPSWIRGVSGHEYHILLRKKKMWAKTGTPRL 527
              +  +++ GV+     +L R  ++ ++TG P L
Sbjct: 158 LTDSAVAYVIGVA----ELLTRTSQVISRTGEPML 188


>UniRef50_Q5FHD8 Cluster: Putative uncharacterized protein; n=2;
           Ehrlichia ruminantium|Rep: Putative uncharacterized
           protein - Ehrlichia ruminantium (strain Gardel)
          Length = 521

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = -3

Query: 531 VSI*VYQFLPTFSFFLVGYDIHVHSHPESMTVYYIMF*LDVDYQVLKCLYSHFVQKELFL 352
           +SI  Y FL T S FL+   ++   H + + + Y    L +D++    ++ H  + EL+ 
Sbjct: 34  LSIGFYVFLVTSSIFLIFSIVNFIMHRKGIPIKYESKDLSIDFEKQAAIFIHTPENELYK 93

Query: 351 LTKDYQV 331
           +  +Y +
Sbjct: 94  IAPNYNI 100


>UniRef50_Q8W333 Cluster: Putative transposon protein; n=2; Oryza
           sativa (japonica cultivar-group)|Rep: Putative
           transposon protein - Oryza sativa subsp. japonica (Rice)
          Length = 394

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +3

Query: 279 GGLLPRSEGKALPIPEYRPDNPWSVRKALF--GQNDYIDILGPGNLHPVK-TLYNIPSWI 449
           G LLP   G  LP   Y+    W++R  L   G N + D+    +  PV   +YN+PSW+
Sbjct: 183 GDLLPA--GHILPETTYQAKKVWNIRFGLSTDGMNPFGDMSSRHSTWPVALVIYNLPSWL 240


>UniRef50_Q09AY6 Cluster: Putative uncharacterized protein; n=1;
           Stigmatella aurantiaca DW4/3-1|Rep: Putative
           uncharacterized protein - Stigmatella aurantiaca DW4/3-1
          Length = 767

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 261 QEKIWRGGLLPRSEGKALPIPEYRPDNPW 347
           Q  +WRG   PRS G +LP P+  P   W
Sbjct: 39  QSPVWRGRYRPRSRGLSLPRPDQLPVEQW 67


>UniRef50_Q0V696 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 458

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
 Frame = +3

Query: 195 TVNVVRTRYHADKKRLVRRYGYQEKIWRGGLLPRSEGKALPIPEYRPDNPWSVRKALFGQ 374
           T+ VV  +YH +    +RRY  Q++     + P+     +P  E R   P +        
Sbjct: 176 TLTVVEDQYHRESNASLRRYRQQQQA-AANVRPQYRAPMVPRTEDRQQYPRNALPVKTLA 234

Query: 375 NDYIDILG---PGNLHPVKTLYNIPSWIRGVSGHEYH 476
           + Y   LG     N  P++TL   PS+++G SG + H
Sbjct: 235 SSYAQGLGQQYTRNAMPLRTL--APSYMQG-SGQQQH 268


>UniRef50_Q9X1C4 Cluster: Antibiotic ABC transporter, transmembrane
           protein, putative; n=11; cellular organisms|Rep:
           Antibiotic ABC transporter, transmembrane protein,
           putative - Thermotoga maritima
          Length = 256

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = +3

Query: 336 DNPWSVRKALFGQNDYIDILGPGNLHPVKTLYNIPSWIRGVS 461
           DNPW+  K +FG  DY+  L PG      T++N+ S+I GVS
Sbjct: 45  DNPWA--KMMFGGVDYLTYLAPGIF--AMTVFNM-SFISGVS 81


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 666,363,094
Number of Sequences: 1657284
Number of extensions: 13941051
Number of successful extensions: 31093
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 30252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31064
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)