Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2k21
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.3  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   3.9  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   6.8  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   6.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 405 NLHPVKTLYNIPSWIRGVSGHEYHI 479
           ++H  ++ +N  SW R  S HE H+
Sbjct: 75  DVHHFESSFNAQSWQRLTSLHELHV 99


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/48 (27%), Positives = 18/48 (37%)
 Frame = +3

Query: 252 YGYQEKIWRGGLLPRSEGKALPIPEYRPDNPWSVRKALFGQNDYIDIL 395
           YG     W   + P+ E     +  Y   N   + K L+G N  I  L
Sbjct: 90  YGLTLPSWTNNIFPKGELFDATVFTYNITNSTPLLKKLYGGNSTIIFL 137


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 539 FCRSQSRCTSFCPH 498
           F R   RC  FCP+
Sbjct: 43  FSRCDGRCQRFCPN 56


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 539 FCRSQSRCTSFCPH 498
           F R   RC  FCP+
Sbjct: 43  FSRCDGRCQRFCPN 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,182
Number of Sequences: 438
Number of extensions: 4991
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)