Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2k15
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0263 + 2136858-2137331 155 3e-38
12_01_0323 - 2459854-2460306 155 4e-38
11_01_0317 - 2365493-2365786,2365825-2365953 117 7e-27
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237... 31 0.64
09_06_0349 + 22457820-22457987,22458202-22458246,22458597-224586... 31 1.1
06_03_1161 - 28089177-28089359,28089473-28089700,28089776-280898... 29 4.5
12_02_0123 - 13930138-13932471 28 5.9
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165... 28 7.8
>01_01_0263 + 2136858-2137331
Length = 157
Score = 155 bits (376), Expect = 3e-38
Identities = 74/105 (70%), Positives = 91/105 (86%)
Frame = +1
Query: 52 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 231
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 232 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKVV 366
YKG++ GKV+QVYR+++V+++ERI REK NG+T VGIHPSKVV
Sbjct: 61 SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVV 104
Score = 109 bits (262), Expect = 2e-24
Identities = 52/82 (63%), Positives = 69/82 (84%)
Frame = +1
Query: 358 KVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDR 537
+VVRG YKG++ GKV+QVYR+++V+++ERI REK NG+T VGIHPSK V+ KLK++KDR
Sbjct: 56 QVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDR 114
Query: 538 KAILDRRAKGRLAALGKDKGKY 603
KAILDR+A+GR A K KGK+
Sbjct: 115 KAILDRKARGR--AADKAKGKF 134
>12_01_0323 - 2459854-2460306
Length = 150
Score = 155 bits (375), Expect = 4e-38
Identities = 74/105 (70%), Positives = 91/105 (86%)
Frame = +1
Query: 52 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 231
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 232 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKVV 366
YKG++ GKV+QVYR+++V+++ERI REK NG+T VGIHPSKVV
Sbjct: 61 SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVV 104
Score = 108 bits (260), Expect = 3e-24
Identities = 52/82 (63%), Positives = 68/82 (82%)
Frame = +1
Query: 358 KVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDR 537
+VVRG YKG++ GKV+QVYR+++V+++ERI REK NG+T VGIHPSK V+ KLK++KDR
Sbjct: 56 QVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDR 114
Query: 538 KAILDRRAKGRLAALGKDKGKY 603
KAILDR+A GR A K KGK+
Sbjct: 115 KAILDRKASGR--AADKAKGKF 134
>11_01_0317 - 2365493-2365786,2365825-2365953
Length = 140
Score = 117 bits (282), Expect = 7e-27
Identities = 63/105 (60%), Positives = 78/105 (74%)
Frame = +1
Query: 52 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 231
MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+N VVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYN-------------VVRG 47
Query: 232 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKVV 366
YKG++ GKV+QVYR+++V+++ERI REK NG+T VGIHPSKVV
Sbjct: 48 SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVV 91
Score = 110 bits (264), Expect = 1e-24
Identities = 53/85 (62%), Positives = 68/85 (80%)
Frame = +1
Query: 349 HPSKVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMN 528
H VVRG YKG++ GKV+QVYR+++V+++ERI REK NG+T VGIHPSK V+ KLK++
Sbjct: 40 HKYNVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLD 98
Query: 529 KDRKAILDRRAKGRLAALGKDKGKY 603
KDRKAILDR+A GR A K KGK+
Sbjct: 99 KDRKAILDRKASGR--AADKAKGKF 121
>03_05_0440 + 24322332-24322388,24323478-24323615,24323654-24323736,
24325038-24325128,24326091-24326189,24326356-24326418,
24327182-24327259,24329354-24329543,24329812-24330065,
24330159-24330531,24331193-24331276,24332085-24332371,
24332495-24332542,24333194-24333220,24333951-24333987,
24334063-24334250,24334343-24334521,24334595-24334877,
24335481-24335717,24335798-24335988,24336552-24336561,
24336844-24336984,24337073-24337288,24338437-24338727,
24338852-24339025
Length = 1272
Score = 31.5 bits (68), Expect = 0.64
Identities = 22/119 (18%), Positives = 54/119 (45%)
Frame = +1
Query: 19 LSRVVLAKSDRMKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPI 198
++ V +A M +++ T S+ + R+ A + + R L K L F+V+++ +
Sbjct: 946 VNEVAVAAQQSM-YSQPCTLSQIQEREADIRALAELSRALDKKASLKGLVLMFSVEALLV 1004
Query: 199 RKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKVVRGH 375
+ V G K + + + +RK++ + + +++ + A+A + + GH
Sbjct: 1005 ELRHMNEEVYGRQKDGEAFRDFEHFRKQYAMVLVQLRDSNDHVASALLSLRQRNTYHGH 1063
>09_06_0349 +
22457820-22457987,22458202-22458246,22458597-22458650,
22458742-22458846,22458932-22459138,22459217-22459302,
22459423-22460330,22460566-22460624
Length = 543
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +1
Query: 229 GHYKGQQVGKVMQVYRKKFVVYIERI-QREKANGATAYVGIHPSKVVRGHYKGQQVGKV 402
GH V QV+ + V E Q A+G +A HP+ V HY+G G V
Sbjct: 312 GHEVNPSVTLNQQVFSRHRVGRTENFAQNSFASGGSAIGSKHPASVRHSHYRGANAGAV 370
>06_03_1161 -
28089177-28089359,28089473-28089700,28089776-28089814,
28090681-28090737,28090924-28091046
Length = 209
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = +1
Query: 55 KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPI------RKDDEV 216
+F + ++S++ ++F I+ + L + R+K S+P+ R D V
Sbjct: 42 EFRLRTSTSQQPTLCQNFVVKFMIKTCPIQMRLKRWERKKCKPNSLPVLHKMHVRIGDTV 101
Query: 217 QVVRGHYKGQQVGKVMQVYRKKFVVYIE 300
QV+ G KG +VG+V ++++ V ++
Sbjct: 102 QVIAGREKG-KVGEVTRLFKHNSTVIVK 128
>12_02_0123 - 13930138-13932471
Length = 777
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 318 GQWCNSICRHSPFKGCTWTLQRPTG 392
G W ++ C SP +GC W + TG
Sbjct: 568 GPWTDTHCSWSPREGCDWIVFSSTG 592
>12_02_0996 -
25115643-25115708,25115869-25116107,25116484-25116577,
25116726-25116864,25116960-25117081,25117261-25117491,
25117583-25117644,25118335-25118461,25118890-25119183,
25119266-25119622
Length = 576
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = +3
Query: 432 IH*EDSKRKGQWCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRG 611
+H S+ +G C H+ K C C + E + Q+ R + Q ++ I R
Sbjct: 463 LHENLSQVEGHDIALCCNHNYMKQCKCSIAQEPQLQARARQNAASQQSQLHEKGRQIDRS 522
Query: 612 NCHSH 626
HS+
Sbjct: 523 AVHSN 527
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,228,044
Number of Sequences: 37544
Number of extensions: 411213
Number of successful extensions: 1013
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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