Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2k15
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...   133   1e-31
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...   133   1e-31
Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...   133   1e-31
Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical pr...    36   0.026
Z81593-6|CAB04740.2|  367|Caenorhabditis elegans Hypothetical pr...    31   0.57 
AF047662-5|AAC04440.1|  385|Caenorhabditis elegans Hypothetical ...    29   4.0  
AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormo...    28   5.3  
Z81075-7|CAI79229.1|  342|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z81075-3|CAI79228.1|  192|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z81075-2|CAB03048.1|  368|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AL032645-3|CAI79264.1|  342|Caenorhabditis elegans Hypothetical ...    28   7.0  
AL031637-1|CAA21047.2|  317|Caenorhabditis elegans Hypothetical ...    28   7.0  

>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score =  133 bits (321), Expect = 1e-31
 Identities = 61/104 (58%), Positives = 83/104 (79%)
 Frame = +1

Query: 52  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 231
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 232 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKV 363
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSKV
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKV 103



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 28/47 (59%), Positives = 40/47 (85%)
 Frame = +1

Query: 361 VVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSK 501
           V+RG +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK
Sbjct: 57  VMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score =  133 bits (321), Expect = 1e-31
 Identities = 61/104 (58%), Positives = 83/104 (79%)
 Frame = +1

Query: 52  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 231
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 232 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKV 363
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSKV
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKV 103



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 28/47 (59%), Positives = 40/47 (85%)
 Frame = +1

Query: 361 VVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSK 501
           V+RG +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK
Sbjct: 57  VMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score =  133 bits (321), Expect = 1e-31
 Identities = 61/104 (58%), Positives = 83/104 (79%)
 Frame = +1

Query: 52  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 231
           MK N  V+S   K+RK HF+APSH RR +MS+PL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 232 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKV 363
            +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSKV
Sbjct: 61  RHKG-NTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKV 103



 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 44/81 (54%), Positives = 64/81 (79%)
 Frame = +1

Query: 361 VVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRK 540
           V+RG +KG   G+V++ YRKKFV++I++I REKANG+T ++GIHPSK  I KLK++KDR+
Sbjct: 57  VMRGRHKGN-TGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSKVAITKLKLDKDRR 115

Query: 541 AILDRRAKGRLAALGKDKGKY 603
           A+++R+A GR    G  KGK+
Sbjct: 116 ALVERKAAGRSRVTGILKGKH 136


>Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical
           protein F49A5.4 protein.
          Length = 308

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
 Frame = +3

Query: 300 EDSKRKGQWCNSIC-RHSPFKGCTWTLQRPT---------GWQSDAGVS*KVCCIH*EDS 449
           +D K +  W   IC RH P   CTW LQ  T         GW S+     K+C     + 
Sbjct: 105 KDQKVENLWAGLICDRHGP-AWCTWDLQSGTTAVYNNFADGWPSNED---KICNYFMTNG 160

Query: 450 KRKGQWCNSICRHSPFKVCD 509
            + G+W ++ C  +   VC+
Sbjct: 161 TQAGKWASASCTETMSFVCE 180


>Z81593-6|CAB04740.2|  367|Caenorhabditis elegans Hypothetical
           protein T20B3.12 protein.
          Length = 367

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
 Frame = +3

Query: 300 EDSKRKGQWCNSICRHSPFKGCTWTLQRPT--GWQSDA-----GVS*KVCCIH*EDSKRK 458
           +D + K  W   IC ++    CTW +Q  T   + + A     GV+ + C  +     + 
Sbjct: 163 KDQQVKNLWTGLICDNNDPSLCTWDVQSGTTAAYNNFAKGYPSGVN-EECIYYMTTGTQA 221

Query: 459 GQWCNSICRHSPFKVCD 509
           GQW + +C  +   VC+
Sbjct: 222 GQWASGLCNETMSFVCE 238


>AF047662-5|AAC04440.1|  385|Caenorhabditis elegans Hypothetical
           protein T22B2.3 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = +1

Query: 109 SAPSHIRRVLMSSPLSKELRQKFNVKSMPIRK-DDEVQVVRGHYKGQQVGKVMQVYRKKF 285
           + P  I+  L  S   KE  ++  +   P     +EV  ++     + +GKV++V R+K+
Sbjct: 87  TVPIVIQTRLKISEYIKETEKRDGIVQKPYENVHNEVMQIQ-----RDLGKVVKVIREKY 141

Query: 286 VVYIERIQREKANGATAYVGIHPSKVVR 369
           +  I      + +G  A V ++ +KVV+
Sbjct: 142 ISSIPVNDSRQIDGLLANVAVYRNKVVQ 169


>AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 119 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 673 FKNFIYLKNYLFKRPPWLWQFPRCI 599
           F NF++LKN+L  +     +F +CI
Sbjct: 79  FSNFLFLKNFLIPKTSRFCRFKKCI 103


>Z81075-7|CAI79229.1|  342|Caenorhabditis elegans Hypothetical
           protein F35C12.3c protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 463 WPFLFESSQCIQQTFYDTPASLC 395
           W  +F  ++CI  TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 322 WPFLFESSQCIQQTFYDTPASLC 254
           W  +F  ++CI  TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239


>Z81075-3|CAI79228.1|  192|Caenorhabditis elegans Hypothetical
           protein F35C12.3b protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 463 WPFLFESSQCIQQTFYDTPASLC 395
           W  +F  ++CI  TF + P SLC
Sbjct: 67  WRCMFAQNKCIGTTFQNIPISLC 89



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 322 WPFLFESSQCIQQTFYDTPASLC 254
           W  +F  ++CI  TF + P SLC
Sbjct: 67  WRCMFAQNKCIGTTFQNIPISLC 89


>Z81075-2|CAB03048.1|  368|Caenorhabditis elegans Hypothetical
           protein F35C12.3a protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 463 WPFLFESSQCIQQTFYDTPASLC 395
           W  +F  ++CI  TF + P SLC
Sbjct: 243 WRCMFAQNKCIGTTFQNIPISLC 265



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 322 WPFLFESSQCIQQTFYDTPASLC 254
           W  +F  ++CI  TF + P SLC
Sbjct: 243 WRCMFAQNKCIGTTFQNIPISLC 265


>AL032645-3|CAI79264.1|  342|Caenorhabditis elegans Hypothetical
           protein F35C12.3c protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 463 WPFLFESSQCIQQTFYDTPASLC 395
           W  +F  ++CI  TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 322 WPFLFESSQCIQQTFYDTPASLC 254
           W  +F  ++CI  TF + P SLC
Sbjct: 217 WRCMFAQNKCIGTTFQNIPISLC 239


>AL031637-1|CAA21047.2|  317|Caenorhabditis elegans Hypothetical
           protein Y47H9B.2 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 637 KRPPWLWQFPRCIYPCLCQVQPVC 566
           ++ PW ++    +YP LC++  +C
Sbjct: 249 RKYPWYYKMSSAMYPALCELAGIC 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,034,722
Number of Sequences: 27780
Number of extensions: 378288
Number of successful extensions: 1103
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)