Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2k09
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 28 1.4
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.3
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 27 3.3
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 26 4.4
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 26 4.4
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 25 7.6
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 25 7.6
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 25 7.6
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 73 FSCSQCDFTAQFESALTMHRQLHHPTE 153
F C +CD +S LT H++ +H E
Sbjct: 139 FRCDKCDMMFVKQSGLTNHKRTYHQVE 165
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 3.3
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Frame = +1
Query: 337 SHPEENDPLKTFNDISIPSEC-----TSKHLRIDSVS----RTSAMTTCLRDLHKETYG- 486
S+ E++ LK+FND +IP +SK+++ ++S R++ ++ L LH++
Sbjct: 162 SNKEDSPLLKSFNDSAIPENAANLSSSSKNMKDSTLSSQKARSNTSSSFLTPLHEQLESR 221
Query: 487 CHLCSSEFDRITALDRHLLN-DHK-ISIEELLKLVLNKTKD 603
C L ++ D + + N H +S +++L + N T +
Sbjct: 222 CALHTAAKDPFRSKNSLRCNRGHSPLSSQQILPAISNNTSE 262
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 26.6 bits (56), Expect = 3.3
Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 5/134 (3%)
Frame = +1
Query: 151 EDDVPQLDKPLEKANTLPRAKIL-SPINNGNENTNF-KLPGRTSSATRL---FDRLRAKI 315
E+D + + L NT PR++ L S + N +EN++ K + S F +
Sbjct: 522 ENDNSKSNDYLSVRNTRPRSRSLNSLVGNKSENSSSSKAKSESKSQGNYVCTFAGCNKRF 581
Query: 316 YKSRTLFSHPEENDPLKTFNDISIPSECTSKHLRIDSVSRTSAMTTCLRDLHKETYGCHL 495
++ L SH + + F S C R R + T ++ + C
Sbjct: 582 TRAYNLKSHMNTHTNYRPFQC----SICKKSFARQHDKRRHEQLHTGIK-----AFACVT 632
Query: 496 CSSEFDRITALDRH 537
C+ F R+ AL+RH
Sbjct: 633 CNQRFARMDALNRH 646
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 40 SFCGVFITIMAFSCSQCDFTAQFESALTMHRQLHHPTEDDVPQLDKPLEKANTL 201
SF G+ I++ SCS F S + QL E + + ++ L +AN L
Sbjct: 432 SFSGISPAIISPSCSSHAFVKAIPSISSKFSQLAEEYESQLREKEEDLIRANRL 485
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +1
Query: 406 KHLRIDSVSRTSAMTTCLRDLHKETYGCHLCSSEFDRITALDRHLLNDHKISIEELLKLV 585
K L ++S+ + L+D+ + S + + LDR + H+ ++ ++ LV
Sbjct: 49 KALNVESIWLCPIYPSPLKDMGYDVSDYKQIDSRYGTLEDLDRLMKALHERDMKLVMDLV 108
Query: 586 LNKTKD 603
LN T D
Sbjct: 109 LNHTSD 114
>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 125 CTDNFTTLQRTTYLNLTSHWRKPTHYQE 208
C D TT +RT Y N TS + YQ+
Sbjct: 30 CIDCNTTFERTDYRNHTSCMTEAQRYQK 57
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.4 bits (53), Expect = 7.6
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Frame = +1
Query: 310 KIYKSRTLF-SHPEENDPLKTFNDISIPSECTSKHLRIDSVSRTSAMTTCLRDLHKETYG 486
K+ S T+F P+ + FN I S C + ID A++T L H YG
Sbjct: 941 KLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELPKYALSTPLEIRHWCPYG 1000
Query: 487 CHLCSSEFDRITALDRHLLNDHKISIEELLKLVLNKTKDCLNDE--DSAI 630
+S+ R L K+S++ + +V CL D DSA+
Sbjct: 1001 FQKSTSDKCRYAVL-------QKLSVKRIADMVEASIGACLLDSGLDSAL 1043
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 7.6
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = +1
Query: 220 SPINNGNENTNFKLPGRTSSATRLFDRLRAKIYKSRTLFSHPEENDPLKTFNDISIPSEC 399
SP +E N KL G+T+ + +FD+ + + F+ P +N P +F++ +
Sbjct: 142 SPAAAFDEMRN-KLVGKTNYKS-IFDKSTSNSTVTSNQFNKPTQNSPFNSFSNNNNSFNN 199
Query: 400 TSKHLRIDSVSRTSAMTTCL 459
+ I TSA T+ L
Sbjct: 200 NQQANDIFGAPTTSAFTSQL 219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,713
Number of Sequences: 5004
Number of extensions: 57630
Number of successful extensions: 199
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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