Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2k09
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0345 + 22428356-22428547,22428920-22429363 31 0.64
06_01_0278 - 2042574-2042612,2042738-2043055,2043150-2043296,204... 31 0.85
06_01_0280 - 2056449-2056487,2056613-2056930,2057025-2057171,205... 31 1.1
06_01_0303 + 2194345-2194414,2195228-2195328,2195818-2196657,219... 30 1.5
11_04_0142 + 14027726-14029081 30 2.0
05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,585... 29 2.6
04_03_0592 - 17678172-17679415,17679751-17679897,17680656-17681268 29 3.4
02_01_0753 - 5586705-5586766,5587864-5588056,5588154-5588423,558... 29 3.4
12_01_0822 + 7592752-7593255 29 4.5
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270... 29 4.5
07_03_0207 - 15183894-15184685,15184993-15185078,15186042-151861... 28 7.9
>09_06_0345 + 22428356-22428547,22428920-22429363
Length = 211
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 516 SVEFGRAKMTSVCFFMQISEARGHCA-SSGHGID 418
S+ FG A S+CF + +A HC SG GID
Sbjct: 71 SLTFGVASCLSMCFMTNLRQATSHCLHESGIGID 104
>06_01_0278 -
2042574-2042612,2042738-2043055,2043150-2043296,
2043382-2044221,2045182-2045282,2045666-2045791,
2047124-2047214
Length = 553
Score = 31.1 bits (67), Expect = 0.85
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -1
Query: 488 HPYVSLC--RSLRHVVIALVRDTESILKCLDVHSLGIE 381
HP V+L RSL + + VR TE+ L CL HSL +E
Sbjct: 251 HPTVTLSGLRSLMRLYLCCVRITENELGCLLSHSLALE 288
>06_01_0280 -
2056449-2056487,2056613-2056930,2057025-2057171,
2057273-2058112,2059044-2059117,2059515-2059647,
2059804-2059941
Length = 562
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -1
Query: 488 HPYVSLC--RSLRHVVIALVRDTESILKCLDVHSLGIE 381
HP V+L RSL + + VR TE+ L CL HSL +E
Sbjct: 260 HPTVTLSGLRSLTRLYLCRVRITENELGCLLSHSLALE 297
>06_01_0303 +
2194345-2194414,2195228-2195328,2195818-2196657,
2196743-2196889,2196985-2197365
Length = 512
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 488 HPYVSL--CRSLRHVVIALVRDTESILKCLDVHSLGIE 381
HP V+L RSL + + VR TE+ L C HSL +E
Sbjct: 202 HPTVTLGGLRSLTRLYLCCVRITENELSCFLSHSLALE 239
>11_04_0142 + 14027726-14029081
Length = 451
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 430 SRTSAMTTCLRDLHKETYGCHLCSSEFDRITALDRHL 540
S +A + +E + C +C EFD A+D H+
Sbjct: 100 SAAAAAAAAASTMAREVFACRICRKEFDTRKAVDGHM 136
>05_02_0034 +
5856165-5856183,5858845-5859173,5859275-5859277,
5859440-5859517,5859623-5860090,5860378-5860437,
5860442-5860666,5860791-5860952,5861502-5861870,
5861950-5863390,5863598-5863701,5863744-5863779,
5863780-5863977,5864275-5864538
Length = 1251
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +1
Query: 379 ISIPSECTSKHLRIDSVSRTSAMTTCLRDLHKETYGCHLCSSEF 510
+ +P++ DS+ R A+ C DLH GC C ++
Sbjct: 584 LGVPAQSRKMDAEFDSIDRECAL--CYYDLHLSASGCPCCPEKY 625
>04_03_0592 - 17678172-17679415,17679751-17679897,17680656-17681268
Length = 667
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = +1
Query: 313 IYKSRTLFSHPEENDPLKTFNDISIPSECTSKHLRIDSVSRTSAMTTCLRDLHKETYGCH 492
IY + + FS+P +P + + + C +DS + S+ + C+ + Y C
Sbjct: 127 IYATSSNFSNPFGGEPPFVVDWVVANNTCAEARKHLDSYACASSNSVCIDSSNGPGYFCK 186
Query: 493 LCSSEFDRITALDRH 537
CS F+ L H
Sbjct: 187 -CSQGFEGNPYLQGH 200
>02_01_0753 -
5586705-5586766,5587864-5588056,5588154-5588423,
5588522-5588687,5589049-5589209,5590065-5590181,
5590269-5590549,5590750-5590833,5591100-5592542,
5593167-5593575
Length = 1061
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = +1
Query: 265 GRTSSATRLFDRLRAKIYKSRTLFSHPEENDPLKTFNDISIPSECTSKHLRIDSVSRTSA 444
GR R+ +R +IY SRT N P++ ND S S S+S S
Sbjct: 129 GRFRKKRRVAGEIRLRIYLSRTAICDEPRNMPMQLINDTPC-SSMRSVGTTASSLSARSV 187
Query: 445 MTT 453
TT
Sbjct: 188 GTT 190
>12_01_0822 + 7592752-7593255
Length = 167
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -1
Query: 518 ILSNSDEQR*HPYVSLCRSLRHVVIALVRDTESILKC 408
+++N EQ+ P VS+ + L+HV +L+ E +L C
Sbjct: 55 VVTNGKEQQQEP-VSIAQELQHVSASLLSPVEHVLDC 90
>06_03_1067 -
27326167-27326295,27326572-27326656,27326993-27327033,
27327274-27327333,27327843-27327962,27328842-27329114,
27329186-27329257,27329798-27329860,27329957-27330139,
27330544-27330660,27330734-27332683,27332770-27332907,
27333003-27333284,27334650-27335522
Length = 1461
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/74 (28%), Positives = 29/74 (39%)
Frame = +1
Query: 103 QFESALTMHRQLHHPTEDDVPQLDKPLEKANTLPRAKILSPINNGNENTNFKLPGRTSSA 282
Q ALT H L+H P P +A L LSP T+ P ++
Sbjct: 15 QLADALTAHLSLYHAATPPPPSSSSP--RAAILRWLASLSPPCRAAAATSLLTPAAAAAL 72
Query: 283 TRLFDRLRAKIYKS 324
+ RLRA+ + S
Sbjct: 73 LSMLRRLRARGHSS 86
>07_03_0207 -
15183894-15184685,15184993-15185078,15186042-15186144,
15186890-15186971,15187112-15187203,15187295-15187383,
15187467-15187547,15188610-15188724,15188894-15188935
Length = 493
Score = 27.9 bits (59), Expect = 7.9
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +1
Query: 451 TCLRDLHKETYGCHLCSSEFDRITAL 528
+CL+D+ + +GC +C ++ ++I L
Sbjct: 465 SCLKDIESKKWGCPICRAKINQIIRL 490
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,325,814
Number of Sequences: 37544
Number of extensions: 349241
Number of successful extensions: 913
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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