Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2k09
(677 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.040
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34) 32 0.37
SB_9297| Best HMM Match : RVT_1 (HMM E-Value=7e-21) 32 0.37
SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32) 31 1.1
SB_44764| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_5864| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 3.5
SB_23025| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.6
SB_8854| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_26192| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 6.0
SB_19648| Best HMM Match : HEAT (HMM E-Value=5.1e-05) 28 6.0
SB_11852| Best HMM Match : fn3 (HMM E-Value=1.2e-24) 28 6.0
SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 6.0
SB_30070| Best HMM Match : zf-C2H2 (HMM E-Value=4.79945e-42) 28 6.0
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0) 28 8.0
SB_13281| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 35.5 bits (78), Expect = 0.040
Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 12/167 (7%)
Frame = +1
Query: 79 CSQCDFTAQFESALTMHRQLHHPTED------DVPQLDKPLEKANTLPRAKILSPINNGN 240
C+QC + S+L H H D LD +E+ P AK + +
Sbjct: 360 CTQCSKSFNSGSSLARHFAWHKKASDVQCHENSTAALDSQVEEK---PNAKPSKMEFSDH 416
Query: 241 ENTNFKLPGRTSSATRLFDRLRAKIYKSRTLFSHPEENDPLKTFNDISIPSECTSKHLR- 417
+ T+ L + SS+ + AK +K + P + + F+ + KH R
Sbjct: 417 KCTHCSLAFKDSSSLAKHNAWHAKTFKQKDKRGAPLDQNRTTVFSKAEM--RYLEKHYRC 474
Query: 418 IDSVSRTSAMTTCLRDLHK----ETY-GCHLCSSEFDRITALDRHLL 543
+ S S+ LR + K +TY CH+C S F + L +H L
Sbjct: 475 MKCFSVYSSRNNFLRHVSKAHLYDTYYQCHMCGSSFTSMEDLTQHTL 521
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +1
Query: 376 DISIPSECTSKHLRIDSVSRTSAMTTCL-RDLHKETYGCHLCSSEFDRITALDRHL 540
D+S C K +R TT + + Y C+ CS FD +L RHL
Sbjct: 20 DLSRHMRCHEKMTPSKQETREEQKTTAVPTTMDSSAYQCNNCSKAFDNSASLSRHL 75
>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
Length = 1691
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 475 ETYGCHLCSSEFDRITALDRHLLNDHKISIEELLKLVLN 591
E YGC L S +F LD ++ H + +EE+LKL ++
Sbjct: 201 EQYGCRLWSHDFSADKVLD--MVTGHPVFVEEILKLQMS 237
>SB_9297| Best HMM Match : RVT_1 (HMM E-Value=7e-21)
Length = 1032
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 475 ETYGCHLCSSEFDRITALDRHLLNDHKISIEELLKLVLN 591
E YGC L S +F LD ++ H + +EE+LKL ++
Sbjct: 929 EQYGCRLWSHDFSADKVLD--MVTGHPVFVEEILKLQMS 965
>SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 394 ECTSKHLRIDSVSRTSAMTTCLRDLHKETYGCHLCSSEFDRITALDRHLL-NDHKISI 564
E T + + + + A + + + +E + C+ C S F TAL++H++ +D ++I
Sbjct: 104 EETQRDIALFLNNTNDAFLSIINNEQQERFLCNRCDSSFKHFTALEKHIISHDGNVTI 161
>SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32)
Length = 382
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 481 YGCHLCSSEFDRITALDRHLLNDHK 555
Y CHLC + + R T L HL HK
Sbjct: 335 YECHLCGARYTRGTGLTSHLKAKHK 359
>SB_44764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 100 AQFESALTMHRQLHHPTEDDVPQLDK 177
A F +LT HR +H P D P LDK
Sbjct: 368 ATFWESLTAHRYVHRPINPDDPPLDK 393
>SB_5864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 463 DLHKETYGCHLCSSEFDRITALDRH 537
+ HK+ +GC +C EF ++L++H
Sbjct: 124 ETHKKKFGCDICEKEFVFYSSLEKH 148
>SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 618
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 475 ETYGCHLCSSEFDRITALDRHL 540
E Y C LCS +F R++ L H+
Sbjct: 422 EKYRCRLCSKDFTRLSGLKTHI 443
>SB_23025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +1
Query: 352 NDPLKTFNDISIPSECTSKHLRIDSVSRTSAMTTCLRDLHKETYGCHLCSSEFDRITALD 531
+D +KT+NDI+I TS+H S SR + R H TY H+ + T+
Sbjct: 45 HDRVKTYNDITI----TSQHTMATSRSRQNIQR---RHDHVTTYNGHVTITSKHTTTSRS 97
Query: 532 RH 537
RH
Sbjct: 98 RH 99
>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1535
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 131 DNFTTLQRTTYLNLTSHWRKPTHYQEPRS*AQSTMVTKTRISSFQVERHQRRV 289
D+FT LQR + +WRK H+++ S + M + R + +R R+
Sbjct: 1116 DSFTRLQRNEKRSDFKNWRKKKHWKKYSSDVDALMRKRRRKQDKKYQRELERL 1168
>SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1239
Score = 28.7 bits (61), Expect = 4.6
Identities = 41/189 (21%), Positives = 71/189 (37%), Gaps = 7/189 (3%)
Frame = +1
Query: 25 KRLFLSFCGVFITIMAFSCSQCDFTAQFESALTMHRQLHHPTEDDVPQLDKPLEKANTLP 204
+R F + I F C CD AL +H ++H TE+ Q ++ K ++
Sbjct: 1043 RRQFTNMGSSSTQIHPFHCHGCDRQFTTRRALNIHFRVH--TEEHYFQCEECPRKCDSEE 1100
Query: 205 RAKILSPINNGNENTNFKLPGRTSSATRLFDRLRA---KIYKSRTL---FSHPEENDPLK 366
+ ++ G+ K P +RL +R K+++ F H +
Sbjct: 1101 TFLMHMRLHEGSFKCP-KCPMTFPRRSRLAVHVRTHSDKVFQCDQCGKSFRHSRSLARHE 1159
Query: 367 TFNDISIPSECTSKHLRIDSVSRTSAMTTCLRDLHKET-YGCHLCSSEFDRITALDRHLL 543
+ P CT S R +T LR E + C CS F + ++RH+
Sbjct: 1160 LLHSGQRPYRCTEPECE-QSFGRQDHLTDHLRTHTGERPFQCPHCSKTFRQSGVMNRHVR 1218
Query: 544 NDHKISIEE 570
+ H+ + E
Sbjct: 1219 SAHEEGVGE 1227
>SB_8854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 472 KETYGCHLCSSEFDRITALDRHLL 543
++ Y C++CS F ++T L RH+L
Sbjct: 192 EKPYTCNICSRGFAQLTNLQRHIL 215
>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 61 TIMAFSCSQCDFTAQFESALTMHRQLHHPTE 153
T M F C QCD S L +HR+ H E
Sbjct: 563 TNMIFKCEQCDEYMPSHSKLLIHRKERHDLE 593
>SB_26192| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 777
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +1
Query: 397 CTSKHLRIDSVSR--TSAMTTCLRDLHKE-TYGCHLCSSEFDRITALDRHLL 543
C +K +++ SR S T L E TY C C F+R T L RHL+
Sbjct: 438 CFTKEIKMADQSRGEKSPENTSNDSLRTEKTYKCDECGKCFNRKTNLKRHLI 489
>SB_19648| Best HMM Match : HEAT (HMM E-Value=5.1e-05)
Length = 485
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 346 EENDPLKTFNDISIPSECTSKHLRIDSVSRTSAMTTCLRDLHKETYGCHLC 498
EE D K NDIS+ S +HL + +R + + C+R C C
Sbjct: 241 EEPDVAKACNDISVCSSGVQRHLCV--FARRAMTSLCVRQACNNISACKGC 289
>SB_11852| Best HMM Match : fn3 (HMM E-Value=1.2e-24)
Length = 691
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 229 NNGNENTNFKLPGRTSSATRLFDRLRAKIYKS-RTLFSHPEENDPLKTF 372
+N N+N N ++ G L D A +YKS RTL + P+ P F
Sbjct: 5 DNDNDNDNVEISGLNIWNLNLTDNEVALVYKSCRTLDAPPQPEVPWSAF 53
>SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 587
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 472 KETYGCHLCSSEFDRITALDRHLL 543
++ Y C +CS F R L+RHL+
Sbjct: 354 EKPYQCEICSKSFTRKDCLNRHLM 377
>SB_30070| Best HMM Match : zf-C2H2 (HMM E-Value=4.79945e-42)
Length = 436
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/71 (23%), Positives = 29/71 (40%)
Frame = +1
Query: 79 CSQCDFTAQFESALTMHRQLHHPTEDDVPQLDKPLEKANTLPRAKILSPINNGNENTNFK 258
C +CD + L HR+ H P P K + + + K+ S + +E+ K
Sbjct: 200 CPECDKVFSCPANLASHRRWHRPRS---PHDKKSSQPQKPVEKKKVESESESDSESDTEK 256
Query: 259 LPGRTSSATRL 291
PG + + L
Sbjct: 257 KPGSPAVESEL 267
>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 3312
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 403 SKHLRIDSVSRTSAMTTCLRDLHKETYGCHLCSSEFDRITALDRHLL 543
S+H ++ S + T A+ D + E H CS D ITA+ L+
Sbjct: 2578 SEHAQLLSWNETFAVWKAYIDFYTEARDIHTCSGTADCITAVASELM 2624
>SB_13281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 448 TTCLRDLHKETYGCHLCSSEFDRITALDRHLLNDHK 555
T C+ D + CHLC+ F++ L H+L+ H+
Sbjct: 326 TRCV-DQGDRKFPCHLCNRSFEKRDRLRIHILHVHE 360
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,913,733
Number of Sequences: 59808
Number of extensions: 447763
Number of successful extensions: 1737
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1733
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -