Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2j21
(349 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 1.2
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 1.2
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 1.2
U28943-2|AAA68357.1| 613|Caenorhabditis elegans Hypothetical pr... 28 2.1
U58753-6|AAC24440.1| 705|Caenorhabditis elegans Hypothetical pr... 27 2.8
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
+I+ PT+ + +GN I I +A+ +P D G FV + +I++
Sbjct: 4070 YILVPTSETATKALPTDESGNVIYPITKADGTPLATDSTGTFVTDDGQIIEK 4121
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIK 160
+++ P++ + + G I ++ + SP D G FVNR+ +++
Sbjct: 2377 YVILPSSKNSVDSQPTDDAGRVIYPVVLPDGSPLATDSTGNFVNRHGDIVE 2427
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
+I+ P+ ++ + GN I I + + +P D G FV + +I++
Sbjct: 5455 YILVPSDGEVTKTLPTDDVGNVIYPITKPDGTPLATDSTGSFVTDDGQIIEK 5506
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
+I+ + D+ + TGN I I + + +P D G FV+ + +I++
Sbjct: 3780 YIILSSDTDVTKELPTDDTGNVIYPITKPDGTPLGTDTSGSFVSDDGQIIEK 3831
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
+I+ PT+ + +GN I I +A+ +P D G FV + +I++
Sbjct: 4115 YILVPTSETATKALPTDESGNVIYPITKADGTPLATDSTGTFVTDDGQIIEK 4166
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIK 160
+++ P++ + + G I ++ + SP D G FVNR+ +++
Sbjct: 2440 YVILPSSKNSVDSQPTDDAGRVIYPVVLPDGSPLATDSTGNFVNRHGDIVE 2490
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
+I+ P+ ++ + GN I I + + +P D G FV + +I++
Sbjct: 5500 YILVPSDGEVTKTLPTDDVGNVIYPITKPDGTPLATDSTGSFVTDDGQIIEK 5551
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
+I+ + D+ + TGN I I + + +P D G FV+ + +I++
Sbjct: 3825 YIILSSDTDVTKELPTDDTGNVIYPITKPDGTPLGTDTSGSFVSDDGQIIEK 3876
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
+I+ PT+ + +GN I I +A+ +P D G FV + +I++
Sbjct: 4115 YILVPTSETATKALPTDESGNVIYPITKADGTPLATDSTGTFVTDDGQIIEK 4166
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIK 160
+++ P++ + + G I ++ + SP D G FVNR+ +++
Sbjct: 2440 YVILPSSKNSVDSQPTDDAGRVIYPVVLPDGSPLATDSTGNFVNRHGDIVE 2490
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
+I+ P+ ++ + GN I I + + +P D G FV + +I++
Sbjct: 5500 YILVPSDGEVTKTLPTDDVGNVIYPITKPDGTPLATDSTGSFVTDDGQIIEK 5551
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 8 HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
+I+ + D+ + TGN I I + + +P D G FV+ + +I++
Sbjct: 3825 YIILSSDTDVTKELPTDDTGNVIYPITKPDGTPLGTDTSGSFVSDDGQIIEK 3876
>U28943-2|AAA68357.1| 613|Caenorhabditis elegans Hypothetical
protein E04F6.5a protein.
Length = 613
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 38 ISRVTGGRTGNNIVDIIQAN 97
+SRVTGG TG+N ++ A+
Sbjct: 467 VSRVTGGNTGSNFGQVVDAS 486
>U58753-6|AAC24440.1| 705|Caenorhabditis elegans Hypothetical
protein W03B1.8 protein.
Length = 705
Score = 27.5 bits (58), Expect = 2.8
Identities = 8/28 (28%), Positives = 20/28 (71%)
Frame = -2
Query: 330 YVVAFLFLIS*FSNKVVSYFCFCTVTVS 247
++V F+F+IS + ++++ Y FC + ++
Sbjct: 155 FLVPFIFIISTYFSEILQYGYFCVIAIT 182
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,205,013
Number of Sequences: 27780
Number of extensions: 97126
Number of successful extensions: 322
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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