Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2j21
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   1.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   3.2  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   4.2  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   4.2  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   4.2  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   4.2  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   4.2  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   4.2  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   4.2  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   4.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   7.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   7.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   9.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   9.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/40 (25%), Positives = 15/40 (37%)
 Frame = +1

Query: 13  YETDGGRHYIKSDGRSHRQQYRRYHPSQQLAD*RRSTWPI 132
           Y T G  H+    G SH      +H S       + + P+
Sbjct: 409 YSTPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPL 448


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 254 VTVQKQKYETTLLENYDIRNRN 319
           V V++   E  +L+N+DI+++N
Sbjct: 580 VDVEEILGEAKVLQNFDIKDKN 601


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 113 GDQLGQFVNRNRSLI 157
           G+Q+ +F+N N  L+
Sbjct: 203 GEQMNRFINENSELL 217


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 13  YETDGGRHYIKSDGRSHRQQYRRY 84
           Y  DG R   +   R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 13  YETDGGRHYIKSDGRSHRQQYRRY 84
           Y  DG R   +   R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 13  YETDGGRHYIKSDGRSHRQQYRRY 84
           Y  DG R   +   R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 13  YETDGGRHYIKSDGRSHRQQYRRY 84
           Y  DG R   +   R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 13  YETDGGRHYIKSDGRSHRQQYRRY 84
           Y  DG R   +   R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 13  YETDGGRHYIKSDGRSHRQQYRRY 84
           Y  DG R   +   R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 13  YETDGGRHYIKSDGRSHRQQYRRY 84
           Y  DG R   +   R ++++ RRY
Sbjct: 245 YRNDGERSCSRDRSREYKKKDRRY 268


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +2

Query: 245 QETVTVQKQKYETTLLENY 301
           ++++T Q Q+Y+   +E Y
Sbjct: 659 EQSLTYQDQQYQVVSVEQY 677


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = -1

Query: 145 VSIYKLAKLIAFSRRVVGLDDI 80
           ++I  +  ++ FS+R+ G D++
Sbjct: 381 ITILTVQLIVEFSKRLPGFDEL 402


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 127 AKLIAFSRRVVGLDDIDD 74
           A ++ F   V+GLD ID+
Sbjct: 60  ATVVYFHVTVMGLDSIDE 77


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 56  GRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKEF 166
           GRTG N  +    +N+  E +  G   NRN    K F
Sbjct: 99  GRTGFNNKNKDGDDNNDYEDNDYGNQDNRNDRRKKTF 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,200
Number of Sequences: 438
Number of extensions: 1364
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)