Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2j20
         (263 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024798-3|AAP86612.1|  361|Caenorhabditis elegans Hypothetical ...    26   4.2  
AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical ...    26   4.2  
AF078784-1|AAK18967.1|  458|Caenorhabditis elegans Hypothetical ...    25   7.4  

>AC024798-3|AAP86612.1|  361|Caenorhabditis elegans Hypothetical
           protein Y48G9A.9b protein.
          Length = 361

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 96  YITKSLIKTGFIPNTFIC 43
           YI  + +KT ++ NTFIC
Sbjct: 124 YIHANYVKTNYLRNTFIC 141


>AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical
           protein Y48G9A.9a protein.
          Length = 352

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 96  YITKSLIKTGFIPNTFIC 43
           YI  + +KT ++ NTFIC
Sbjct: 115 YIHANYVKTNYLRNTFIC 132


>AF078784-1|AAK18967.1|  458|Caenorhabditis elegans Hypothetical
           protein H34I24.2 protein.
          Length = 458

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 34  IASTNKGVWYKPSFD 78
           I + N+GVWY P ++
Sbjct: 317 IGTNNRGVWYSPGYN 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,873,343
Number of Sequences: 27780
Number of extensions: 41704
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)