Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2j19
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce... 218 6e-58
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.6
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 26 4.7
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces... 26 4.7
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 26 6.3
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 26 6.3
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 26 6.3
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa... 26 6.3
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 25 8.3
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 8.3
>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 218 bits (533), Expect = 6e-58
Identities = 107/203 (52%), Positives = 138/203 (67%), Gaps = 6/203 (2%)
Frame = +3
Query: 132 MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 311
MD+QNR G + GGGGVA + E+N RRERLR+LALETIDL+KDPY MKNHLG++EC+LCL
Sbjct: 1 MDYQNRAGVRFGGGGVAGYQETNAARRERLRKLALETIDLSKDPYLMKNHLGTFECRLCL 60
Query: 312 TLHNNEGSYLAHTQGKKHQXXXXXXXXXXXXXXXXXXXP-----EKPRIEPKK-FVKIGR 473
T H NE SYL HTQGKKHQ + ++ KK VKIGR
Sbjct: 61 TTHANENSYLTHTQGKKHQTNLARRQALENKKSQENAPQVLLGISQSHVQVKKSVVKIGR 120
Query: 474 PGYRVTKQKDPETGQQSLLFQVDYPEIAEGVIPRHRFMSAYEQKIEPPDRRWQYLLFAAE 653
PGY+V+K ++ E+G+ L FQ+ YP+I PR+R MSAYEQ++E PDR++QYL+ AAE
Sbjct: 121 PGYKVSKIREAESGKFGLRFQIKYPDIEVNAKPRYRIMSAYEQRVEAPDRKFQYLVVAAE 180
Query: 654 PYETIAFKVPSREVEKHDSKFWT 722
PYE+IAFK +++ KFW+
Sbjct: 181 PYESIAFK-----IDRAPGKFWS 198
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 1.6
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +3
Query: 489 TKQKDPETGQQSLLFQVDYPEIAEGVIPRHRFMSAYEQKIEPPDRRWQYLLFAAEPYETI 668
T DP + ++ +D P+ A G SA I PP R W F ++ +E I
Sbjct: 646 TSLLDPARAVRKVIDGIDPPKEA-GAGATADVESAANSPITPP-RTWHSPDFTSKSFEPI 703
Query: 669 AFKVPSR 689
K+PSR
Sbjct: 704 ERKLPSR 710
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 297 CKLCLTLHNNEGSYLAHTQGKKHQ 368
C++C +EG+Y +H KKH+
Sbjct: 72 CEVCNKKFYSEGAYSSHMASKKHR 95
>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +1
Query: 499 KILKLDSRACSSK*IIQRLQRVLYLDIDLCLLMNRRLSLQTADGSICY---LQQSLMKLL 669
K++K+D+ SK + R++ +DID+ L + + + + + L+ +L +
Sbjct: 87 KVIKIDANPLKSKHLETATARIMGMDIDIVNLRHHDYTNSNSSNKLVFGTPLEDALRRDA 146
Query: 670 HLKSLAEKLKS 702
+ +L LKS
Sbjct: 147 TINALFYNLKS 157
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 144 NRPGGKTGGGGVASWSESNRDRRERLRQLA 233
NR G GGG + +SNR R R +Q A
Sbjct: 455 NRGGHPRGGGNRGGYRQSNRQPRYRGQQKA 484
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 628 GSICYLQQSLMKLLHLKSLAEKLKS 702
G+ CY+ L+ L HLK + L S
Sbjct: 47 GNTCYVSSVLVSLYHLKPFRDSLNS 71
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 6.3
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +3
Query: 504 PETGQQSLLFQVDYPE-IAEGVIPRHRF-MSAYEQKIEPPDRRWQYLLF---AAEPYETI 668
P Q F V YP+ I G P +R + + K + D + + A EPY+ I
Sbjct: 417 PPKAVQGYRFNVFYPDLIGTGRAPTYRIERTRRKNKSDTTDLQDDVCIIRFIAGEPYQDI 476
Query: 669 AFKVPSRE 692
AF + ++
Sbjct: 477 AFSIVDKD 484
>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 562 VLYLDIDLCLLMNRRLSLQTADGSICYLQQSLMK 663
+ +LD D L+MN+ LSLQ S LQ+SL++
Sbjct: 156 IWWLDQD-ALIMNKNLSLQELFLSPAMLQKSLLR 188
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 640 YLQQSLMKLLHLKSLAEKLKSMIQNS 717
YLQ +L++L S+ EK KS QNS
Sbjct: 917 YLQLNLVRLRVYISVLEKYKSQAQNS 942
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 189 SESNRDRRERLRQLALETIDLNKDPYFMKN 278
+ SN+D R R+ + IDLN P +KN
Sbjct: 438 ASSNQDYRVRVLSRNFKCIDLNNVPEIIKN 467
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,893
Number of Sequences: 5004
Number of extensions: 50457
Number of successful extensions: 130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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