Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2j15
(290 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 3.0
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 25 3.0
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy... 24 3.9
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 24 3.9
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 24 3.9
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 24 3.9
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 24 3.9
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 24 3.9
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 24 5.2
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 24 5.2
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 24 5.2
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ... 23 6.9
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|... 23 6.9
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 23 6.9
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 23 6.9
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 23 9.1
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 24.6 bits (51), Expect = 3.0
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +3
Query: 75 KNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAV 224
+N L E ++ +L SKY LST +T ++ K + +++ ++
Sbjct: 669 RNQDLLSEMEAIRKELENSKYQQQLSTDRLTNANNDVEAFKKEAKELRSI 718
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 24.6 bits (51), Expect = 3.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 15 EIVNSDEKIQKTYELAEFDLKNLSSLESY 101
E + E IQK YE+ E + + S E++
Sbjct: 730 EASSQQENIQKAYEIIEKEFPTIGSAENH 758
>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 410
Score = 24.2 bits (50), Expect = 3.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 289 LLVKLVTSGWNLLCIKANV 233
+L L+ GW ++C ANV
Sbjct: 21 ILAWLIEEGWEVICYMANV 39
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 24.2 bits (50), Expect = 3.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 111 SEFHSFLNCLDFLNQIRPIRRFFGSFHRCLQ-FR*PFE 1
S H F++CL F+N +F + R LQ FR P E
Sbjct: 772 SVMHEFIDCLSFIN-----LKFVDALRRLLQCFRLPGE 804
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 24.2 bits (50), Expect = 3.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 39 IQKTYELAEFDLKNLSSLESYETLKIKLALSKYM 140
+Q Y L +FD + SSL+++ L KL+ S M
Sbjct: 509 LQGLYALRDFDQISTSSLQTFTMLWKKLSTSLNM 542
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.2 bits (50), Expect = 3.9
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 54 ELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQP 173
EL + K L+S+ YE +KIK + Y+ ++ +P
Sbjct: 1959 ELCQASFKFLASILPYENVKIKESTINYLLERVGTDIQEP 1998
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 24.2 bits (50), Expect = 3.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 163 ISRVLSIAMYLLSANLIFRV 104
+ R+LSIA +LLS + + R+
Sbjct: 14 LKRILSIAFFLLSLSTLLRI 33
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 24.2 bits (50), Expect = 3.9
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 290 FVSKISN-KWMESIVYKS*CAKHHGGNLPSVCFVSKYFQQRLGHFQGAEHSHVF 132
+++ +S+ KW+E + K C K+ N S K F + +G+ A + +
Sbjct: 159 YITGVSDTKWLEFVSAKGQCPKYLYWNNKSYLLKKKRFLKEVGNSPSAVYCRYY 212
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 23.8 bits (49), Expect = 5.2
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +3
Query: 42 QKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADT 206
Q+ E A+ + +NLSSL +Y L+ + L ++ +P+L+ T
Sbjct: 182 QRFEEAAKTEAQNLSSLRNYVHLEEQRRLRLKRNAAKHRQLREPILKFISKTIST 236
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 23.8 bits (49), Expect = 5.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 124 RSANTWLCSAPWK*PSRCWK 183
RS T S WK PS+ WK
Sbjct: 153 RSGRTLKLSKEWKNPSKKWK 172
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 23.8 bits (49), Expect = 5.2
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +3
Query: 78 NLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVFSTLAFIHNR 257
N+SS E+ + K+K+ KY+++++ + Q L + D +V S L ++
Sbjct: 769 NVSSEEALQKPKVKITYDKYVSIMNGI--LQVLRQRSTEGVDGVPAGDLVQSYLELREDQ 826
Query: 258 FH 263
FH
Sbjct: 827 FH 828
>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 461
Score = 23.4 bits (48), Expect = 6.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 159 EMTQPLLEIFRNKADTRQIAAVVFSTL 239
E +PL + F+ +D+ QI V STL
Sbjct: 328 EDKEPLFDAFKTVSDSLQILTGVVSTL 354
>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 23.4 bits (48), Expect = 6.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 183 IFRNKADTRQIAAVVFSTLAFIHNRFHPLVTNFTN 287
IFR + R V AFI N++ PLV + T+
Sbjct: 93 IFRFNLNHRGYLEVKSGFRAFIENKYSPLVFHATS 127
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 23.4 bits (48), Expect = 6.9
Identities = 6/17 (35%), Positives = 12/17 (70%)
Frame = -2
Query: 262 WNLLCIKANVLNTTAAI 212
WN LC+K ++ +A++
Sbjct: 311 WNKLCLKGGIIEVSASL 327
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 23.4 bits (48), Expect = 6.9
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 196 LFLNISNSGWVISRVLSIAMYL-LSANLIFRV 104
+ N SN G+++SR+L + M + L+ IF V
Sbjct: 235 IIANKSNEGYLLSRILFLLMNMTLARKRIFLV 266
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 23.0 bits (47), Expect = 9.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 247 IKANVLNTTAAICRVSALFLNISNSGWVISRVLSIAMYLLS 125
I A L T+AIC + F+ + + W I R L LS
Sbjct: 330 IIAPTLLITSAICMFTIFFVPCARTLWAICRHLRTCPLSLS 370
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,216,126
Number of Sequences: 5004
Number of extensions: 21572
Number of successful extensions: 60
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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