Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2j15
(290 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0757 + 24267599-24268882 29 0.63
10_07_0161 - 13674631-13675433,13675793-13675862 28 1.4
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 28 1.4
10_08_0687 - 19893148-19893327,19893442-19893645,19893761-198940... 26 4.4
09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173... 26 5.8
09_04_0527 - 18337968-18338077,18338440-18341212 25 7.7
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 25 7.7
>06_03_0757 + 24267599-24268882
Length = 427
Score = 29.1 bits (62), Expect = 0.63
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +1
Query: 118 NWRSANTWLCSAPWK*PSRCWK 183
+WR A W+C PW + W+
Sbjct: 348 SWRPAGPWVCFNPWPAQQQAWR 369
>10_07_0161 - 13674631-13675433,13675793-13675862
Length = 290
Score = 27.9 bits (59), Expect = 1.4
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +1
Query: 118 NWRSANTWLCSAPWK*PSRCWK 183
+WR A W+C PW W+
Sbjct: 229 SWRPAGPWVCFNPWPAQQLAWR 250
>03_02_0870 +
11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 12 TEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLE 182
TE+ S+++ K E+ E D+ + S + YET ++ + SK LS L +P +
Sbjct: 84 TELQLSNDRQSKPDEVTEDDMPSTSGRQLYET-EVPASSSKKHCSLSPLPAYEPAFD 139
>10_08_0687 -
19893148-19893327,19893442-19893645,19893761-19894096,
19894185-19894472,19894561-19894776,19896414-19896737
Length = 515
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -1
Query: 197 FVSKYFQQRLGHFQGAEHSHVFAERQFNFQSFIAF*TA-*IF*IKFGQFVGFLD 39
F F++ G SH + + +FQ F+ T IF I FGQ + LD
Sbjct: 151 FSGDVFKRNAAKLAGVVSSHAASNQSMDFQGFLMRATMDSIFTIAFGQDLNTLD 204
>09_06_0001 +
20114108-20115686,20115813-20115928,20116416-20117394,
20118820-20119082
Length = 978
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 197 FVSKYFQQRLGHFQGAEH 144
F+SKY+ Q +F+GA H
Sbjct: 915 FISKYYNQSYEYFKGAGH 932
>09_04_0527 - 18337968-18338077,18338440-18341212
Length = 960
Score = 25.4 bits (53), Expect = 7.7
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +3
Query: 54 ELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVFS 233
E EFD +N+SS E L L +Y+ +L + + L+I D + V+ +
Sbjct: 265 ESREFDAENMSSTELKVELTKILDQKRYLIILDDVWLATDFLKIREVLVDNGLGSRVIIT 324
Query: 234 T 236
T
Sbjct: 325 T 325
>03_05_1124 + 30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 15 EIVNSDEKIQKTYELAEFDLKNLSSLES 98
EI+ D K+ + E+ E NLSSLES
Sbjct: 1259 EILEKDSKLNQLQEMIERLETNLSSLES 1286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,511,906
Number of Sequences: 37544
Number of extensions: 130192
Number of successful extensions: 310
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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