Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2j13
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0244 + 1786009-1788048                                           30   2.2  
12_01_0977 - 9900073-9900521,9900594-9900698,9900770-9900959,990...    29   2.9  
10_01_0140 - 1674305-1674586,1674683-1674838,1675676-1676622,167...    29   3.8  
06_01_0236 + 1804368-1804374,1804514-1804532,1804652-1805011,180...    28   8.8  
02_03_0081 - 14970024-14970098,14970194-14970310,14970456-149708...    28   8.8  
02_02_0583 + 11813372-11813738,11823130-11823209,11823357-118235...    28   8.8  

>07_01_0244 + 1786009-1788048
          Length = 679

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 627 LVVYTHLGI*LKDA*LHPHTWSRNCKNVSEP 535
           L+VY H+     D  LH HT+S NC+ +  P
Sbjct: 432 LLVYEHMPNGSLDKYLHEHTYSSNCRTLGWP 462


>12_01_0977 -
           9900073-9900521,9900594-9900698,9900770-9900959,
           9901035-9901093,9901297-9901688,9901770-9902059,
           9902146-9903030
          Length = 789

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 63  KKPRNMADAPYNVWSPLISASCLDKKATYLIDPDDFIDKLTLTPYTVFYN 212
           K+     D   NV +PL+ A  L+      +D  +  DKL + P   F N
Sbjct: 658 KRLEGARDEVANVATPLVQAMFLNNSGPSALDATEIFDKLRVAPDVYFKN 707


>10_01_0140 -
           1674305-1674586,1674683-1674838,1675676-1676622,
           1678976-1679054,1679168-1679207,1679580-1679767,
           1679869-1680024,1680752-1681713,1681866-1681914
          Length = 952

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -2

Query: 539 SLDQTSVFTFGTRNHVCNVTV*YKPLPVHTAARYIVFFQIAQYFLYARRHIDLAVQHVDD 360
           S+   +V T   RN +C   V      + +A+  +   +   +  Y  RH   +  HV D
Sbjct: 739 SISIPTVTTLALRNTICGKPVLKDVASLVSASVVLYCVESGNFDAYDLRHYLWSFSHVKD 798

Query: 359 IIFSF 345
           +IFS+
Sbjct: 799 LIFSY 803


>06_01_0236 +
           1804368-1804374,1804514-1804532,1804652-1805011,
           1805214-1805248,1805306-1805385,1805488-1805701,
           1805972-1806111,1806197-1806235,1806328-1806369
          Length = 311

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 516 ENRCLIKALTHFYNYDSKCVGEVMHLL 596
           +NRCL++AL   YN D   +G+  + L
Sbjct: 147 DNRCLVQALVEKYNDDHNLLGDFAYEL 173


>02_03_0081 -
           14970024-14970098,14970194-14970310,14970456-14970836,
           14971345-14971424,14971925-14972075
          Length = 267

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +3

Query: 372 LNSKINMPPCIQKILGDLKKNNVPRGGMYRKRF--ILNCYIANVVSCTKCENRCLIKALT 545
           + SK++    +  I   L K  + +      R   I +CY   VV   + E+RCL+K L 
Sbjct: 62  IRSKVHKQTWLNSIYKSLPKRYILKRWTREARVGAIEDCYGKIVVEDPRLEDRCLLKFLI 121

Query: 546 H 548
           H
Sbjct: 122 H 122


>02_02_0583 +
           11813372-11813738,11823130-11823209,11823357-11823507,
           11832674-11832778,11832831-11833282
          Length = 384

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = +3

Query: 63  KKPRNMADAPYNVWSPLISASCLDKKATYLIDPDDFIDKLTLTPYTVFYN 212
           K+     D   N  +PL+ A   +       D  +  DKL + P T F N
Sbjct: 252 KRLEGARDEVANAATPLVQAMFFNNNGPSTFDASEIFDKLRVAPDTYFKN 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,393,477
Number of Sequences: 37544
Number of extensions: 424190
Number of successful extensions: 924
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)