Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2j13
         (732 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF051933-1|AAC73052.1| 1097|Drosophila melanogaster cyclin T pro...    33   0.40 
AE014296-2931|AAF49325.1| 1097|Drosophila melanogaster CG6292-PB...    33   0.40 
AY071233-1|AAL48855.1|  406|Drosophila melanogaster RE26969p pro...    30   3.7  
AE014298-1908|AAF48271.1|  406|Drosophila melanogaster CG1998-PA...    30   3.7  
AF080399-1|AAC32190.1| 1461|Drosophila melanogaster mitotic chec...    29   6.5  

>AF051933-1|AAC73052.1| 1097|Drosophila melanogaster cyclin T
           protein.
          Length = 1097

 Score = 33.1 bits (72), Expect = 0.40
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -2

Query: 617 IHILGFD*KM-HDFTHTLGVV-IVKMCQSLDQTSVFTFGTRNHVCNVTV*YKPLPVHTAA 444
           +  LGFD  + H  TH +    +VK C+ L QTS F      H+ ++ + Y+P  V    
Sbjct: 168 LQTLGFDVAIDHPHTHVVRTCQLVKACKDLAQTSYFLASNSLHLTSMCLQYRPTVVACFC 227

Query: 443 RYI 435
            Y+
Sbjct: 228 IYL 230


>AE014296-2931|AAF49325.1| 1097|Drosophila melanogaster CG6292-PB,
           isoform B protein.
          Length = 1097

 Score = 33.1 bits (72), Expect = 0.40
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -2

Query: 617 IHILGFD*KM-HDFTHTLGVV-IVKMCQSLDQTSVFTFGTRNHVCNVTV*YKPLPVHTAA 444
           +  LGFD  + H  TH +    +VK C+ L QTS F      H+ ++ + Y+P  V    
Sbjct: 168 LQTLGFDVAIDHPHTHVVRTCQLVKACKDLAQTSYFLASNSLHLTSMCLQYRPTVVACFC 227

Query: 443 RYI 435
            Y+
Sbjct: 228 IYL 230


>AY071233-1|AAL48855.1|  406|Drosophila melanogaster RE26969p
           protein.
          Length = 406

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 694 GLRPLQLPANGQSLSTVFIFWQFGGLYTSWDLIKR 590
           G  P+ L   G ++ T+ ++W  G LYT  DL  R
Sbjct: 147 GDEPMVLWVFGTTIFTMLVYWTVGTLYTFMDLTNR 181


>AE014298-1908|AAF48271.1|  406|Drosophila melanogaster CG1998-PA
           protein.
          Length = 406

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 694 GLRPLQLPANGQSLSTVFIFWQFGGLYTSWDLIKR 590
           G  P+ L   G ++ T+ ++W  G LYT  DL  R
Sbjct: 147 GDEPMVLWVFGTTIFTMLVYWTVGTLYTFMDLTNR 181


>AF080399-1|AAC32190.1| 1461|Drosophila melanogaster mitotic
           checkpoint control proteinkinase BUB1 protein.
          Length = 1461

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 549 FYNYDSKCVGEVMHLLIKSQDVYKPPNCQKMKTVDKL 659
           FY+ D  C  ++ ++ IKSQ V  P   QK   V  +
Sbjct: 616 FYDGDETCSTQMFNMFIKSQAVSTPKGTQKQAPVTSI 652


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,538,095
Number of Sequences: 53049
Number of extensions: 748555
Number of successful extensions: 1726
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1726
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3293648160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)