Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2j07
         (768 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    25   0.88 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   0.88 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.7  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   6.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   6.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   6.2  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   8.2  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 252 DLNAIMFNCAEIKLNKGQMLFQTKIYRPD 338
           D N       EI LN   +LF  K++RP+
Sbjct: 210 DCNKNTSTSKEIALNNDVLLFFVKVFRPE 238


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = +1

Query: 391 KLKMXXXXXXXXQPPLSMSKKKTPTLLESISKKISTTETFQRLRNKNLTTLNKIKYDSEL 570
           K+K         + PL++++    T  E + KK S+ E F   R K L  ++     +  
Sbjct: 64  KIKSCRPFKAYIKDPLTLAQGLVST--EMLLKKDSS-EAFNEFRTKILAQVHGTNNGTNK 120

Query: 571 LLHYLYDDQQNKNSD 615
            +  L    QNKN D
Sbjct: 121 NMRRLSTTTQNKNDD 135


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 231 NCTKYYSCRTTLQNRRFC 178
           NC  YY CR+ L     C
Sbjct: 571 NCAAYYVCRSGLSYHLSC 588


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +1

Query: 127 LAPILSRWLARRNLDCCTKTPILQCRAATIVFCAIWCKTANTILT 261
           L P+L R    RN+   T   +L      I    +W K    IL+
Sbjct: 728 LCPVLLRVSILRNIIVGTLMMVLGTGCVRIKITGVWLKFLRVILS 772


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 670 TGASILAHYFAQVHVSNGYSFEFHPGSQPR 759
           TG   +  +  +VHV+   +  F PG +P+
Sbjct: 205 TGDRQIYPWMRKVHVAGASNGTFAPGMEPK 234


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 670 TGASILAHYFAQVHVSNGYSFEFHPGSQPR 759
           TG   +  +  +VHV+   +  F PG +P+
Sbjct: 205 TGDRQIYPWMRKVHVAGASNGTFAPGMEPK 234


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 488  FFEIDSNSVGVFFLLIDSGGC 426
            F E+ SNS+ +       GGC
Sbjct: 1499 FIEVSSNSITLHLSAWSDGGC 1519


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 670 TGASILAHYFAQVHVSNGYSFEFHPGSQPR 759
           TG   +  +  +VHV+   +  F PG +P+
Sbjct: 205 TGDRQIYPWMRKVHVAGASNGTFAPGMEPK 234


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 315 QTKIYRPDNNKTDAAVNTSS 374
           Q + YRP  N T    NTSS
Sbjct: 244 QMQSYRPTGNITPHGSNTSS 263


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,152
Number of Sequences: 336
Number of extensions: 2615
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)