Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2j05
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   2.0  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   2.6  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   4.6  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    25   8.1  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = -1

Query: 574  EFRINKNYSKLIDFLTENFPNNVKNKTFNFSSTGHLFHSLHAYVPSVSDL 425
            +FR +  Y + +DF+ +N  +N+   +  F S   LFH++ A +  VS++
Sbjct: 1059 QFRTDLTYKQKLDFVLKNELDNILPLSEVFPS---LFHAIQATLEKVSNV 1105


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
 Frame = +3

Query: 171  RILSKGSF-LNL-GGFMSNS-LQFRVFT*FLVLNRLLCNSWHGQQQSTPSVRSINSYNSV 341
            +ILS  SF L+L  GF  N+ +   V T   +L+ ++   W G  ++ PSV S++   +V
Sbjct: 954  QILSISSFQLSLLSGFEDNNQISLYVITGVFILSTIV---WWGLYRNLPSVHSLSLPFAV 1010

Query: 342  YSLKSFIVLLNSFA 383
            Y+L      ++S +
Sbjct: 1011 YALAFLFTGISSMS 1024


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 598 YALFKLFKEFRINKNYSKLIDFLTENFPNNVKNKTFNFSSTGHLFH 461
           YA F+ +    IN+ +  L+        N V+N   +F+ST  ++H
Sbjct: 850 YATFQKYLSSFINRKFGVLLSSSFIQQLNTVENLNLSFNSTDAVYH 895


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 356 VYCVVEQLCQIFCLQSNLFALLHQIADAGHVRVQRVKQM 472
           V C V  LC+++C+  +  +    I D   + V  V+ M
Sbjct: 36  VVCFVSVLCRLYCILMSAASATQTICDQSILHVHGVENM 74


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 53  NFIIQYLSVFD--FLFARTPSVGMLFLFF 133
           +FI ++ S+     LFA T SVG LF+FF
Sbjct: 226 SFINRHPSILKDMLLFACTGSVGQLFIFF 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,921,754
Number of Sequences: 5004
Number of extensions: 61557
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)