Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2j05
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0134 + 12879254-12879596,12879689-12879796,12879905-128800...    31   0.90 
05_01_0428 - 3379116-3379262,3379357-3379537,3379690-3379785,337...    30   1.6  
03_06_0133 - 31906305-31906582,31906820-31907105,31907442-319075...    28   6.4  
02_01_0166 + 1154695-1156569                                           28   8.4  

>01_03_0134 +
           12879254-12879596,12879689-12879796,12879905-12880000,
           12880090-12880182,12880861-12880949,12881313-12881588,
           12881656-12881808
          Length = 385

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 24/74 (32%), Positives = 36/74 (48%)
 Frame = -1

Query: 604 TSYALFKLFKEFRINKNYSKLIDFLTENFPNNVKNKTFNFSSTGHLFHSLHAYVPSVSDL 425
           TS  L KL   F     Y+ L+++L + FP   K+  F  S   +  H    YVP ++DL
Sbjct: 170 TSSDLTKLNDGFVAEDAYNFLVNWL-DRFPQ-YKDHEFYISGESYAGH----YVPQLADL 223

Query: 424 VKERKQIRLQTEYL 383
           V ER + +    Y+
Sbjct: 224 VYERNKDKKANRYI 237


>05_01_0428 -
           3379116-3379262,3379357-3379537,3379690-3379785,
           3379886-3380034,3380120-3380392,3380895-3380983,
           3381923-3382015,3382143-3382238,3382370-3382477,
           3382917-3383208
          Length = 507

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/74 (31%), Positives = 36/74 (48%)
 Frame = -1

Query: 604 TSYALFKLFKEFRINKNYSKLIDFLTENFPNNVKNKTFNFSSTGHLFHSLHAYVPSVSDL 425
           TS  L  L  +F     YS L+++  + FP   K+  F  S   +  H    YVP ++DL
Sbjct: 153 TSSDLSNLNDDFVAEDAYSFLVNWF-KRFPQ-YKDNEFYISGESYAGH----YVPQLADL 206

Query: 424 VKERKQIRLQTEYL 383
           V ER + +  + Y+
Sbjct: 207 VYERNKDKRASTYI 220


>03_06_0133 -
           31906305-31906582,31906820-31907105,31907442-31907566,
           31907645-31907759,31907852-31908485,31911425-31911555,
           31912308-31912397,31912440-31912486,31913707-31913761,
           31914576-31914908,31915278-31915337,31915427-31915618,
           31916149-31916220,31916307-31916435
          Length = 848

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = -3

Query: 215 HKAAQI*KGTFRQYSLQVFPKLQKFIVEKKGKAYQHWVYAQKENQ 81
           +KA+++ +G+ +  +L     LQKF+V K     Q+W  AQ+E+Q
Sbjct: 751 YKASKVGRGS-QGGTLPNMGILQKFLVPKDQLCRQYWKKAQEESQ 794


>02_01_0166 + 1154695-1156569
          Length = 624

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 421 KERKQIRLQTEYLAKLFNNTIND--FKLYTELYE 326
           K R+ + L T  +  LF N +ND  +K+ T LY+
Sbjct: 476 KIRQNVDLSTNLVDTLFRNNLNDRAYKIVTSLYD 509


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,279,042
Number of Sequences: 37544
Number of extensions: 333062
Number of successful extensions: 798
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)