Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2j05
(712 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025470-3|AAB71057.1| 394|Caenorhabditis elegans Hypothetical ... 37 0.016
U88315-15|AAB42365.1| 351|Caenorhabditis elegans Annexin family... 30 1.4
AC024810-16|AAO21412.2| 684|Caenorhabditis elegans Cdt (s. pomb... 30 1.4
AC024810-15|AAF60769.1| 741|Caenorhabditis elegans Cdt (s. pomb... 30 1.4
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 29 4.3
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 28 5.7
U49830-14|AAK31479.1| 182|Caenorhabditis elegans Hypothetical p... 28 5.7
AF000266-10|AAC71174.2| 124|Caenorhabditis elegans Hypothetical... 28 5.7
Z81588-3|CAB04715.2| 377|Caenorhabditis elegans Hypothetical pr... 28 7.6
>AF025470-3|AAB71057.1| 394|Caenorhabditis elegans Hypothetical
protein W10D9.3 protein.
Length = 394
Score = 36.7 bits (81), Expect = 0.016
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Frame = -1
Query: 607 WTSYALFKLFKEFRINKNYSKLIDFLTENFPNNVKNKTFNFS----STGHLFHSLHAYVP 440
W + + +F +NY IDFL E ++N F FS ++ + H +
Sbjct: 156 WNCFDFVMEYMKFTNYRNYRSKIDFLEEFVTKKLENVNFKFSQQNLNSAPQMNPDHRFFK 215
Query: 439 SVSDLVKERKQIR---LQTEYLAKLFNNTINDFKLYTE 335
++D +++ +Q QT++LA F +D++ TE
Sbjct: 216 IMADFLEDSEQNDRNICQTDFLADQFEKFTHDYREKTE 253
>U88315-15|AAB42365.1| 351|Caenorhabditis elegans Annexin family
protein 4 protein.
Length = 351
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = +2
Query: 593 GVTGPFLHIMASSLQSKWICLRLNDAIIKRHVLVL 697
GV G +H++ + + + + +R+ND ++ +HV +L
Sbjct: 157 GVVGKMMHLLLCNNREEGLGVRVNDELVDKHVKIL 191
>AC024810-16|AAO21412.2| 684|Caenorhabditis elegans Cdt (s. pombe
licensing factor)homolog protein 1, isoform b protein.
Length = 684
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = -1
Query: 511 NVKNKTFNFSSTGHLFHSLHAYVPSVS-DLVKERKQIRLQTEYLAKLFNNTINDFKLYT- 338
NVKN + S HL LH Y S ++ ++RK +Y ++ N + D + Y
Sbjct: 291 NVKNTSGKDFSNEHLSQILHVYPQSYHIEMREQRKAFGQGGKYELEVRPNLVEDLRGYIY 350
Query: 337 ELYEFIERTEGVDCCCPCQLL 275
E TE + CP +LL
Sbjct: 351 EKSPTDGDTEDLPLVCPSKLL 371
>AC024810-15|AAF60769.1| 741|Caenorhabditis elegans Cdt (s. pombe
licensing factor)homolog protein 1, isoform a protein.
Length = 741
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = -1
Query: 511 NVKNKTFNFSSTGHLFHSLHAYVPSVS-DLVKERKQIRLQTEYLAKLFNNTINDFKLYT- 338
NVKN + S HL LH Y S ++ ++RK +Y ++ N + D + Y
Sbjct: 291 NVKNTSGKDFSNEHLSQILHVYPQSYHIEMREQRKAFGQGGKYELEVRPNLVEDLRGYIY 350
Query: 337 ELYEFIERTEGVDCCCPCQLL 275
E TE + CP +LL
Sbjct: 351 EKSPTDGDTEDLPLVCPSKLL 371
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 595 ALFKLFKEFRINKNYSKLIDFLTENFPNNVKNKTFNFSSTGHL 467
+L+ FKE + KL+++L +N+ NN T T +L
Sbjct: 4018 SLYTQFKELKEESKKRKLVEYLDQNYKNNKSYSTLQTLITFNL 4060
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 528 RKIFPTTSKTKRSTFRLPAICFTRCTRTCPASA 430
R P+ SK+ +TF C + C +TC ++A
Sbjct: 81 RACIPSCSKSTGNTFACSTTCESTCDKTCASAA 113
>U49830-14|AAK31479.1| 182|Caenorhabditis elegans Hypothetical
protein C33F10.11 protein.
Length = 182
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 416 LLHQIADAGHVRVQRVKQMAGRRKVERFVFDVV 514
+L + ADA HVRV R+ + + FV+ +V
Sbjct: 101 ILEEDADASHVRVMRIAGFIAQSTIFLFVYTIV 133
>AF000266-10|AAC71174.2| 124|Caenorhabditis elegans Hypothetical
protein W08F4.10 protein.
Length = 124
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = -1
Query: 532 LTENFPNNVKNKT-FNFSSTGHLFH-SLHAYVPSVSDLVKERKQIRLQTEYLAKLFNNTI 359
L F N+ T FN ++ + AY D +++ +Q EYL++ +
Sbjct: 10 LKHGFSNHCLQATGFNHKLWANIQRLDVQAYSSLTLDKLRKMNCETIQFEYLSEFSGTHL 69
Query: 358 NDFKLYTELYEFIERTEGVD 299
N+F Y + E ++ +EG D
Sbjct: 70 NEFIRYCDGLEVVDCSEGRD 89
>Z81588-3|CAB04715.2| 377|Caenorhabditis elegans Hypothetical
protein T07D10.3 protein.
Length = 377
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -1
Query: 352 FKLYTELYEFIERTEGVDCCCPCQLLHKSLFNTRNYVKTLNCKLFDIK 209
F Y E E ER G+ C CQ + +++V + NC+ FD K
Sbjct: 224 FLRYQEKQE--ERAYGLYVCTTCQRRFRDNKGFQSHVASQNCEFFDRK 269
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,063,530
Number of Sequences: 27780
Number of extensions: 342615
Number of successful extensions: 1104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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