Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2j05
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   2.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.6  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 435 TLGTYACNE*NRWPVDEKLNVLFLTLLGKFSV 530
           T+      E   +P DEKL   F  +L KF+V
Sbjct: 50  TIEDVEATEYGEFPEDEKLKCYFNCVLEKFNV 81


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = -1

Query: 499 KTFNFSSTGHLFHSLHAYVPSVSDLVKERKQIRLQTEYLAKLFNNTINDFKLYTELYEFI 320
           K  N S    L H+L    P   +LVKE +      +  A+   N  ++  L TE Y  +
Sbjct: 250 KNLNLSLHASLNHTLTKDQPETYELVKEWRDF---VDNYAE--ENKRDEIVLLTEAYSSL 304

Query: 319 ERT 311
           E T
Sbjct: 305 ENT 307


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 14/64 (21%), Positives = 27/64 (42%)
 Frame = +2

Query: 329 VQLSVQFEIVYCVVEQLCQIFCLQSNLFALLHQIADAGHVRVQRVKQMAGRRKVERFVFD 508
           + + V +  +    EQ    F     L A   Q+  AG+++ Q  +Q       +++   
Sbjct: 192 ILIPVNYSALLSHDEQQLSYFTQDIGLAAYYAQVNLAGYIQEQNQQQQQQPLTQQQYQQQ 251

Query: 509 VVGK 520
           +VGK
Sbjct: 252 IVGK 255


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,461
Number of Sequences: 438
Number of extensions: 4049
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)