Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2j04
         (466 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    28   0.18 
AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein ...    25   1.3  
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    25   1.7  
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          25   1.7  
AY062432-1|AAL47188.1|  391|Anopheles gambiae putative odorant r...    25   1.7  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   1.7  
DQ004402-1|AAY21241.1|  144|Anopheles gambiae lysozyme c-8 protein.    24   2.3  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   5.3  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   6.9  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 27.9 bits (59), Expect = 0.18
 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
 Frame = +3

Query: 78   SIRSRWKRKCRAIKRERYAVKELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGD-LKK 254
            S+  R KR+    + E  A ++  R+KK+L   +E     SE ++ ++ +  +    ++K
Sbjct: 851  SVEDR-KRQLTNCRNEVVATEK--RIKKVLTDTEEVDRKLSEALKQQKTLQKELESWIQK 907

Query: 255  SKKVLEDIEKDNEDVEMSSDDENVV 329
             K+  E +E+D + +E  +  EN++
Sbjct: 908  EKEAQEKLEEDGKRMEKWATKENML 932


>AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein
           protein.
          Length = 705

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 438 YLFWRSYVCATKPGTV 391
           +LFWR++V  TKP  +
Sbjct: 573 HLFWRAFVYITKPAII 588


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 27/97 (27%), Positives = 44/97 (45%)
 Frame = +3

Query: 114 IKRERYAVKELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLEDIEKDNE 293
           + +E  A++E  R KK+    +EE   G E  E E+    D  D        E+ E + +
Sbjct: 448 VSKEMEALRE-GRQKKVQITFEEEIYKGEEDYEGEE----DEED--------EEDEYEGD 494

Query: 294 DVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQYPV 404
           D E   +DE+   +   G     +  T++D +GQY V
Sbjct: 495 DTEEDEEDEDD--ELAAGPLGTSDVVTVEDGDGQYVV 529


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 246  LKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKK 353
            L+K  K   D  +D+E+ E    +E    D EGG++
Sbjct: 953  LQKEVKKEVDAAEDDEEEEEEEQEEEEDEDEEGGEE 988


>AY062432-1|AAL47188.1|  391|Anopheles gambiae putative odorant
           receptor Or5 protein.
          Length = 391

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 333 RPQRFHHLNSFRRLHYPFRCLLILFCFSLNRPR 235
           R QRF  L   RR  Y FR   + FC  +  P+
Sbjct: 18  RLQRFVGLWGERRYRYKFRLAFLSFCLLVVIPK 50


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 20/76 (26%), Positives = 39/76 (51%)
 Frame = +3

Query: 96  KRKCRAIKRERYAVKELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLED 275
           +RK  A++R   A +E   L++ + + +E     +   E+   +  DA   + +KK L +
Sbjct: 713 RRKVAALERYAAASREHDLLEQRIRLFEER----NNDREANFRLLEDA--YQSAKKTLAN 766

Query: 276 IEKDNEDVEMSSDDEN 323
           +EK   +V+  S D+N
Sbjct: 767 VEKKLAEVKAKSSDKN 782


>DQ004402-1|AAY21241.1|  144|Anopheles gambiae lysozyme c-8 protein.
          Length = 144

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 4   FSRDYLQKRVALLQNIFVFKTQWRNRLGVDGSENAG 111
           F R  LQ  + L+QN   + T   N    DGS++ G
Sbjct: 35  FPRSQLQDWICLIQNESRYDTSALNTKNRDGSKDYG 70


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
 Frame = +3

Query: 99   RKCRAIKRERYAVKELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLEDI 278
            RK + ++  +  +      K M+ ++ EE+    EVM  ++V+     D KK + ++ D+
Sbjct: 965  RKLKKLQDSKDKMSRNVNQKAMVLLEREEEQY-KEVMRRKKVV---EDDKKKIQAIITDL 1020

Query: 279  EKDNE---DVEMSSDDEN 323
            +++ +    V  S  DEN
Sbjct: 1021 DEEKKKKLKVAWSEVDEN 1038


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 279  EKDNEDVEMSSDDENVVVDSEGGKKRVFN 365
            E D+ED E   DD++     EG +    N
Sbjct: 1825 EDDDEDDEDDDDDDDDTTTGEGNEHEADN 1853


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 417,677
Number of Sequences: 2352
Number of extensions: 8121
Number of successful extensions: 26
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 40395045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)