Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2j03
         (299 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   2.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   5.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   5.0  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    20   5.0  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    20   6.6  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    20   6.6  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 14  PYRCQLGSRKISTQNNL 64
           P++C++  R  +T+ NL
Sbjct: 162 PFKCKICGRAFTTKGNL 178


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 182  MRIVPNDIGQSRP 220
            M I PN + Q+RP
Sbjct: 1426 MSIAPNRVSQARP 1438


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 182  MRIVPNDIGQSRP 220
            M I PN + Q+RP
Sbjct: 1426 MSIAPNRVSQARP 1438


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +1

Query: 106 DIQLAVFSNILGVSIFLLVILYHYINA 186
           DI+ +   ++LG +   L+I+  + N+
Sbjct: 327 DIERSTILSVLGTACTFLIIIVQFRNS 353


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 14  PYRCQLGSRKISTQNNL 64
           PYRC+L  +  S  + L
Sbjct: 77  PYRCRLCKKAFSDSSTL 93


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 14  PYRCQLGSRKISTQNNL 64
           PYRC+L  +  S  + L
Sbjct: 333 PYRCRLCKKAFSDSSTL 349


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,250
Number of Sequences: 336
Number of extensions: 1359
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5429307
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)