Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2i20
         (270 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    23   5.7  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    23   5.7  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    23   9.9  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    23   9.9  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 54  YNYKKNINASXSKSFVFNEQVLLQ 125
           +++ KNI AS  K F+F+   ++Q
Sbjct: 460 FSFSKNIPASLCKHFLFSGTKIIQ 483


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 30  FLHPSFVQYNYKKNI 74
           F++P F+Q NY KN+
Sbjct: 656 FINPYFLQTNYLKNL 670


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 9   AVQHLKNFLHPSFVQYNY 62
           AV+HL     PSFV  NY
Sbjct: 313 AVKHLFLMQRPSFVSLNY 330


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 57  NYKKNINASXSKSFVFNEQVL 119
           N+K+N     +KS+ F + VL
Sbjct: 555 NFKRNATFMRTKSYTFGQSVL 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 842,859
Number of Sequences: 5004
Number of extensions: 9986
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)