Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2i19
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   5.7  
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    25   5.7  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    24   7.6  
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo...    24   7.6  
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    24   7.6  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    24   10.0 
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    24   10.0 
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    24   10.0 
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    24   10.0 

>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 5   VRSYSGKQGSMPLSTRHTLSYHRTRAPKSR 94
           VR   G+ G + L     L  HR   PKSR
Sbjct: 486 VRQRIGRGGRLMLDRTRALPVHRLSKPKSR 515


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 276 QSYLLGMGNAAATRQSHAALIYITTNLYRLKPLWSG 169
           Q ++  +G+A    + H  + YIT  L  L+ LW G
Sbjct: 173 QIHVKQIGHARLILEPHNEVYYITFPLVTLEGLWYG 208


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 93  DKLLISRGKCLEWGR 137
           D+L+++  +C EWGR
Sbjct: 209 DRLMVALSECNEWGR 223


>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
           Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 189 VYTDWW*CISKLHAIGESP 245
           VY D   CIS LHA G+ P
Sbjct: 83  VYKDGTVCISILHAPGDDP 101


>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 121 VLSGEGDANLVTWGFTA*PKR 183
           +LSG  DA+L+ W  ++ P R
Sbjct: 147 LLSGSTDASLIVWDVSSQPSR 167


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 242 RLANRMQL*YTLPPICIDSNRFGQAVNPHVTKFASPSP 129
           R A+ +   Y +PP  +DSN     ++P  T  +S SP
Sbjct: 203 RSADNLNHRYQVPPTLVDSNSAQGTLSPE-TPSSSDSP 239


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 237 ESPQHCPCLGGRTAE 281
           +SPQHC C G +  E
Sbjct: 232 DSPQHCYCCGNKFNE 246


>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 122 TFTPAYQEFVCSSAPESDDSLKYAL 48
           T +P+ +EFVC +    D+   Y +
Sbjct: 179 TLSPSVEEFVCPNPQTGDNGTTYGV 203


>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 158 GDSPPDQSGLSLYRLVVMYIKAACDW 235
           GD+P   +G   YR++ ++ +A  +W
Sbjct: 109 GDAPWLYAGCYFYRIMSLFFQARSEW 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,703,160
Number of Sequences: 5004
Number of extensions: 33620
Number of successful extensions: 93
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)