Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2i19
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0381 - 3382316-3382459,3382872-3382907,3383323-3383429,338... 29 1.8
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391... 29 1.8
06_01_1138 - 9429447-9433868 28 3.1
01_06_1745 - 39609894-39610030,39610127-39610223,39613856-396139... 28 3.1
06_01_0029 - 288676-289287,289441-289733,289842-290031 27 4.1
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254... 27 5.5
08_01_0678 + 5878291-5878461,5879722-5879984,5881658-5881729,588... 27 5.5
08_02_1340 - 26256768-26256999,26258105-26258774,26259273-262605... 27 7.2
05_01_0301 - 2356880-2357959 27 7.2
04_03_0700 - 18836757-18837329 27 7.2
11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415 26 9.5
10_06_0162 - 11348250-11349531,11349571-11349671 26 9.5
07_01_1173 + 11092482-11093465,11093552-11093914 26 9.5
07_01_0956 + 8029297-8030285,8033204-8033330,8033350-8033640 26 9.5
06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-27... 26 9.5
>08_01_0381 -
3382316-3382459,3382872-3382907,3383323-3383429,
3383518-3383587,3383839-3384663,3384748-3385044,
3385175-3385501,3385760-3386046,3386728-3386896
Length = 753
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 5 VRSYSGKQGSMPLSTRHTLSYHRTRAPKSRQT 100
+RS K+ + + TL +HR RAPK +T
Sbjct: 102 IRSKGDKKKQQVIGMKKTLVFHRGRAPKGERT 133
>04_04_1120 +
31037811-31038813,31038903-31038991,31039094-31039163,
31039270-31039353,31039452-31039528,31039631-31039712,
31039847-31039929,31040270-31040333,31040435-31040566,
31040674-31040777,31040901-31040996,31041144-31041251
Length = 663
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 395 FLKGVKVPTAVMKKE*GDSLKVSESTECDRAATR 294
FL + VP+A++ K+ GD+L+ + S D R
Sbjct: 146 FLANITVPSALVTKQFGDALRAAASAADDEVVVR 179
>06_01_1138 - 9429447-9433868
Length = 1473
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 366 SDEEGMRRFPQSLREHRMRPGGNA*GPLLQ 277
SDEE M+ + L+EH P G A PL++
Sbjct: 386 SDEEIMQEAVEMLKEHMEAPAGKAAEPLIR 415
>01_06_1745 -
39609894-39610030,39610127-39610223,39613856-39613996,
39614094-39614272,39615067-39615111,39615802-39615858,
39615935-39616163,39616348-39616418,39619527-39619635
Length = 354
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 173 QAVNPHVTKFASPSPLKTFTPAYQ-EFVCSS 84
Q NPH K A +P+K TP +VC+S
Sbjct: 321 QVTNPHPAKQAKRTPIKNDTPKRSASYVCNS 351
>06_01_0029 - 288676-289287,289441-289733,289842-290031
Length = 364
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 14 YSGKQGSMPLSTRHTLSYHRTRAPKSRQT 100
Y+ KQ S+ + R TL Y+R RAP ++
Sbjct: 115 YATKQHSLLVGMRKTLVYYRGRAPNGHKS 143
>11_01_0342 +
2548147-2548275,2548385-2548425,2548521-2548570,
2548830-2548974,2549854-2549859,2550122-2550245,
2550422-2550877,2550960-2551013
Length = 334
Score = 27.1 bits (57), Expect = 5.5
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -3
Query: 284 FFSSPTS*AWAMLRRLANRMQL*YTLPPICIDSNRFGQAVNPHVTKFASPSPLKTFTPAY 105
FF+ P+S + +M+ ++ M L P + R P + F P+P + TP+Y
Sbjct: 239 FFTPPSSSSTSMVPPASSMMPTAPPLHPTSASAQRATYGT-PLLQPFPPPTPPPSLTPSY 297
Query: 104 QE 99
E
Sbjct: 298 NE 299
>08_01_0678 +
5878291-5878461,5879722-5879984,5881658-5881729,
5881807-5881878,5882092-5882166,5882443-5882517,
5883623-5883667,5883767-5883831,5883919-5884203,
5884234-5884298,5884435-5884636,5884735-5884905,
5885237-5885355,5886699-5886909,5887007-5887238,
5887325-5887475,5887547-5887945
Length = 890
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 5 VRSYSGKQGSMPLSTRHTLSYHRTRAP 85
++ SG QGSMP S+ +HR +P
Sbjct: 852 IQQSSGTQGSMPSSSSSKPKFHRDTSP 878
>08_02_1340 -
26256768-26256999,26258105-26258774,26259273-26260555,
26262403-26263499
Length = 1093
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -2
Query: 249 AAATRQSHAALIYITTNLYRLKPLWSGGESPCNQIRVAFPTQDIYPGLSR 100
AAA R S A +I++ +LY L G + PC +AF + PG R
Sbjct: 18 AAACRPSMAQVIFVYVSLY-LVAFAQGFDKPCG---LAFGAEQFDPGHPR 63
>05_01_0301 - 2356880-2357959
Length = 359
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 358 RRNEEIPSKSQRAPNATGRQRVRSASSA 275
RR+ +PS S +P A+ R V SASS+
Sbjct: 146 RRSAVMPSSSSSSPGASHRWHVYSASSS 173
>04_03_0700 - 18836757-18837329
Length = 190
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 340 PSKSQRAPNATGRQRVRSASSAVLPPRHGQCCGD 239
P RA + GR+R+R A V PP G+ CG+
Sbjct: 54 PGSESRAKTSAGRRRIRGA-QRVWPP-IGEKCGN 85
>11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415
Length = 1490
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +2
Query: 149 WLHGDS--PPDQSGLSLYRLVVMYIKAAC 229
W+H ++ P DQ L+L+R V + + AC
Sbjct: 809 WIHPETNDPADQRHLNLHRRVTILLDVAC 837
>10_06_0162 - 11348250-11349531,11349571-11349671
Length = 460
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 63 AIIGLGRRRADKLLISRGKCLEWGRRR 143
A + L RRRADK WG RR
Sbjct: 429 AAVELARRRADKTRYGEEPAAAWGSRR 455
>07_01_1173 + 11092482-11093465,11093552-11093914
Length = 448
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +3
Query: 261 LGGRTAEEADLTRCR-PVAFGAL*DFEGISSFLLHHC 368
LG + ADLT CR P A A F + L +C
Sbjct: 136 LGCHSLRSADLTNCRLPAAAAATASFPHLHELTLRYC 172
>07_01_0956 + 8029297-8030285,8033204-8033330,8033350-8033640
Length = 468
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 200 LVVMYIKAACDWRVAAALPMPRR*DC*RSGP 292
++ Y+ A + RVAAALP R C RS P
Sbjct: 4 VIFEYVYYAIELRVAAALPPRPRCHCLRSTP 34
>06_01_0027 -
271199-271424,271628-272095,272721-273018,273133-273343,
273427-274124,274921-274969,276059-276112,276244-276275,
276319-276484,276563-276628,276717-276812,276868-276957,
277302-277398,277496-277575,277709-277753,278006-278134,
278593-278722,278888-279222,279918-280053,280149-280328,
280422-280679,280752-281137
Length = 1409
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 390 KRSQSTYCSDEEGMRRFPQSLREHRMR 310
K S+ T C D R+FP+++ ++R R
Sbjct: 884 KYSEYTPCQDPRRARKFPKTMMQYRER 910
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,152,938
Number of Sequences: 37544
Number of extensions: 273580
Number of successful extensions: 703
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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