Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2i19
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067936-6|AAC19214.1|  348|Caenorhabditis elegans Ground-like (...    29   1.2  
Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical pr...    28   2.1  
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    27   6.5  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    27   6.5  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    27   6.5  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      27   6.5  
AF016687-8|AAK72065.1|  737|Caenorhabditis elegans Hypothetical ...    26   8.7  
AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical ...    26   8.7  

>AF067936-6|AAC19214.1|  348|Caenorhabditis elegans Ground-like (grd
           related) protein 1 protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 346 EIPSKSQRAPNATGRQRVRSASSAVLPPRHGQCCGDSPIACSF 218
           ++PS    AP  T RQ+  S    +LPP    CCG     C F
Sbjct: 205 QLPSAYVTAPPVTIRQQPLS----ILPPPINDCCGKCGAPCKF 243


>Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical
           protein T08G5.5b protein.
          Length = 926

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +1

Query: 265 EVGLLKKRTLRVAARSHSVLSET--LRESPHSFF 360
           E+GL +KR L+    SHS   +T  L+ +PH+F+
Sbjct: 674 ELGLYRKRLLKFLEVSHSYSPQTVLLQLAPHAFY 707


>Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical
           protein T08G5.5a protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +1

Query: 265 EVGLLKKRTLRVAARSHSVLSET--LRESPHSFF 360
           E+GL +KR L+    SHS   +T  L+ +PH+F+
Sbjct: 671 ELGLYRKRLLKFLEVSHSYSPQTVLLQLAPHAFY 704


>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 249 HCPCLGGRTAEEADLTRCRPVAFGA 323
           HC C+ G+  +E     C+P  FG+
Sbjct: 560 HCKCVNGKCDKETGECTCQPGFFGS 584


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 249 HCPCLGGRTAEEADLTRCRPVAFGA 323
           HC C+ G+  +E     C+P  FG+
Sbjct: 560 HCKCVNGKCDKETGECTCQPGFFGS 584


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 249 HCPCLGGRTAEEADLTRCRPVAFGA 323
           HC C+ G+  +E     C+P  FG+
Sbjct: 560 HCKCVNGKCDKETGECTCQPGFFGS 584


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 249 HCPCLGGRTAEEADLTRCRPVAFGA 323
           HC C+ G+  +E     C+P  FG+
Sbjct: 560 HCKCVNGKCDKETGECTCQPGFFGS 584


>AF016687-8|AAK72065.1|  737|Caenorhabditis elegans Hypothetical
           protein T21D12.9c protein.
          Length = 737

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 197 CIDSNRFGQAVNPHVTKFASPSPLKTFTP 111
           C+  NRFG   + HV      +P  T+TP
Sbjct: 594 CVARNRFGSDFSTHVKLQVYQAPKFTYTP 622


>AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical
           protein T21D12.9a protein.
          Length = 881

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 197 CIDSNRFGQAVNPHVTKFASPSPLKTFTP 111
           C+  NRFG   + HV      +P  T+TP
Sbjct: 594 CVARNRFGSDFSTHVKLQVYQAPKFTYTP 622


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,610,626
Number of Sequences: 27780
Number of extensions: 199407
Number of successful extensions: 493
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)