Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2i13
         (766 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    26   0.38 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    26   0.38 
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      24   1.5  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   3.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   3.5  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   4.7  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   6.2  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   8.2  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   8.2  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +3

Query: 135 HHEDEHVGRHRCYGQPHSSYCHR*RDRH*MRPSQS*QNQ 251
           HH+  H  +H  YG    +  H+    H   P Q   NQ
Sbjct: 178 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQ 216


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +3

Query: 135 HHEDEHVGRHRCYGQPHSSYCHR*RDRH*MRPSQS*QNQ 251
           HH+  H  +H  YG    +  H+    H   P Q   NQ
Sbjct: 180 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQ 218


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 415 SVFGLLVPVAAEAGYGWL 468
           S +G+L  +A EAG+ W+
Sbjct: 68  SKYGMLARLAVEAGFDWV 85


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory
          receptor candidate 61 protein.
          Length = 670

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 47 LNKSTTYDTLRWV 9
          + KST YDT+ W+
Sbjct: 1  MTKSTVYDTVSWL 13


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 635 CRRMASPAAGPRSST 679
           CR  ASPA+  RS T
Sbjct: 931 CRNSASPASSDRSGT 945


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 174 HSNDGDRHVRPHDVSVCHSE 115
           HSND + H + H  ++ H E
Sbjct: 307 HSNDLNMHQQHHQQNMSHEE 326


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 444 GDRH*QTEHRVYQHTHSEEQAS 379
           G    Q+ HR+Y H  S  + S
Sbjct: 91  GHEEAQSPHRIYMHPESPSKGS 112


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 620 RCPVCCRRMASPAA 661
           RCPVC RR +  ++
Sbjct: 51  RCPVCDRRFSQSSS 64


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 620 RCPVCCRRMASPAA 661
           RCPVC RR +  ++
Sbjct: 307 RCPVCDRRFSQSSS 320


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,966
Number of Sequences: 336
Number of extensions: 4463
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)